Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00322 * 2 1 4 4 H 1.48503 * 109.46849 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47135 * 119.99467 * 3 2 1 6 6 H 1.48496 * 109.47423 * 239.99913 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.72285 * 2 1 3 8 8 H 1.08003 * 119.99679 * 345.30967 * 7 2 1 9 9 C 1.50698 * 120.00407 * 165.31379 * 7 2 1 10 10 H 1.08995 * 109.47490 * 54.57169 * 9 7 2 11 11 N 1.46900 * 109.47182 * 294.57174 * 9 7 2 12 12 C 1.50705 * 109.47427 * 174.57545 * 9 7 2 13 13 C 1.41374 * 128.01108 * 79.67336 * 12 9 7 14 14 N 1.30167 * 106.40004 * 179.89880 * 13 12 9 15 15 O 1.20927 * 111.60265 * 0.39478 * 14 13 12 16 16 C 1.34038 * 111.56384 * 359.74234 * 15 14 13 17 17 H 0.97004 * 120.00404 * 174.78881 * 1 2 3 18 18 H 1.00906 * 110.99871 * 293.78484 * 11 9 7 19 19 H 1.00896 * 110.99661 * 57.73616 * 11 9 7 20 20 H 1.08002 * 126.79978 * 0.03483 * 13 12 9 21 21 H 1.08008 * 126.77408 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0058 8 1 1.4909 -2.1129 0.2474 9 6 3.4745 -1.2170 -0.3250 10 1 4.0044 -0.5220 0.3263 11 7 3.6675 -0.8191 -1.7258 12 6 4.0141 -2.6090 -0.1193 13 6 3.9064 -3.7212 -0.9853 14 7 4.5221 -4.7059 -0.3973 15 8 4.9718 -4.3730 0.6748 16 6 4.7093 -3.0858 0.9409 17 1 -0.4851 -0.8366 -0.0763 18 1 3.2719 -1.5029 -2.3537 19 1 3.2806 0.0966 -1.8982 20 1 3.4131 -3.7480 -1.9457 21 1 4.9959 -2.5370 1.8259 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592928.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = 33.759904 kcal Electronic energy + Delta-G solvation = -9391.007566 eV Core-core repulsion = 7462.249821 eV Total energy + Delta-G solvation = -1928.757745 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -45.77755 -37.46352 -34.58278 -33.41578 -32.17361 -27.99780 -25.02110 -23.42027 -21.65200 -19.84699 -18.74333 -18.37488 -16.93976 -15.76842 -15.48250 -14.96357 -14.60051 -14.19154 -13.49732 -13.14248 -12.52224 -12.01207 -11.83779 -11.40595 -11.17415 -10.69738 -10.34721 -9.49491 -8.71189 -6.52375 0.67717 1.45092 1.49497 1.53904 1.73722 2.44844 2.47973 2.98187 3.44420 3.96799 4.13927 4.33086 4.56154 4.85809 5.07483 5.29972 5.70709 5.91039 6.33252 6.49870 6.76934 7.29770 7.35311 8.53211 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.077525 B = 0.015337 C = 0.014788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.084819 B = 1825.227782 C = 1893.025883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.015 4.015 3 Si 1.087 2.913 4 H -0.292 1.292 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.629 4.629 8 H 0.011 0.989 9 C 0.252 3.748 10 H 0.059 0.941 11 N -0.845 5.845 12 C -0.173 4.173 13 C -0.011 4.011 14 N -0.397 5.397 15 O 0.090 5.910 16 C -0.067 4.067 17 H 0.253 0.747 18 H 0.329 0.671 19 H 0.334 0.666 20 H 0.190 0.810 21 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -0.655 0.202 9.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.907 3.093 4 H -0.218 1.218 5 H -0.185 1.185 6 H -0.161 1.161 7 C -0.668 4.668 8 H 0.029 0.971 9 C 0.141 3.859 10 H 0.077 0.923 11 N -0.376 5.376 12 C -0.177 4.177 13 C -0.189 4.189 14 N -0.102 5.102 15 O 0.025 5.975 16 C -0.148 4.148 17 H 0.061 0.939 18 H 0.140 0.860 19 H 0.149 0.851 20 H 0.207 0.793 21 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 10.014 -0.374 0.111 10.021 hybrid contribution -1.957 -1.180 -0.060 2.286 sum 8.057 -1.554 0.051 8.205 Atomic orbital electron populations 1.70959 1.08466 1.29703 1.47415 1.27360 0.96044 1.06402 0.91618 0.83504 0.74716 0.71176 0.79876 1.21845 1.18483 1.16117 1.22770 0.96020 0.94729 1.53303 0.97067 1.17479 0.91978 0.87676 0.88740 0.92319 1.59729 1.65339 1.07276 1.05234 1.21671 1.01782 0.98756 0.95530 1.25008 1.01534 0.89165 1.03167 1.73731 1.15101 1.24855 0.96519 1.84675 1.58265 1.26449 1.28103 1.26272 1.01730 0.84218 1.02586 0.93855 0.85981 0.85094 0.79274 0.73337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 13.69 21.44 0.29 -55.59 14 2 C -0.01 -0.80 5.38 84.66 0.46 -0.34 14 3 Si 1.09 45.44 26.40 68.60 1.81 47.25 14 4 H -0.29 -12.65 7.11 99.48 0.71 -11.94 14 5 H -0.26 -10.01 7.11 99.48 0.71 -9.30 14 6 H -0.24 -8.54 5.69 99.48 0.57 -7.97 14 7 C -0.63 -33.63 9.06 25.60 0.23 -33.40 14 8 H 0.01 0.67 7.99 -2.91 -0.02 0.65 14 9 C 0.25 10.99 2.76 43.42 0.12 11.11 14 10 H 0.06 2.46 6.86 -2.39 -0.02 2.44 14 11 N -0.85 -33.85 9.22 -174.95 -1.61 -35.46 14 12 C -0.17 -6.89 5.21 -19.74 -0.10 -6.99 14 13 C -0.01 -0.42 11.56 85.71 0.99 0.57 14 14 N -0.40 -15.06 12.07 -59.28 -0.72 -15.77 14 15 O 0.09 3.10 11.20 71.65 0.80 3.90 14 16 C -0.07 -2.20 12.26 67.17 0.82 -1.38 14 17 H 0.25 15.58 8.73 -92.71 -0.81 14.77 14 18 H 0.33 12.78 8.22 -89.69 -0.74 12.04 14 19 H 0.33 13.33 5.47 -89.70 -0.49 12.83 14 20 H 0.19 6.67 7.80 -2.91 -0.02 6.65 14 21 H 0.25 5.86 8.06 -2.91 -0.02 5.84 14 Total: -1.00 -63.06 191.84 2.95 -60.11 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.14 Total: 26.01 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 2.52 Total: -30.43 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -2.03 Total: -106.83 kcal Atomic # 8 Polarization: 3.10 SS G_CDS: 0.80 Total: 3.90 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.81 Total: 47.25 kcal Total: -63.06 2.95 -60.11 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592928.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.866 kcal (2) G-P(sol) polarization free energy of solvation -63.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds