Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48506 * 109.47064 * 240.00155 * 3 2 1 5 5 H 1.48506 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47398 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.41382 * 128.00344 * 100.00214 * 12 9 7 14 14 N 1.30181 * 106.39527 * 179.97438 * 13 12 9 15 15 O 1.20919 * 111.60372 * 359.97438 * 14 13 12 16 16 C 1.34042 * 111.56680 * 359.76551 * 15 14 13 17 17 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 18 18 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 19 19 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 20 20 H 1.07997 * 126.80484 * 359.97438 * 13 12 9 21 21 H 1.07998 * 126.77422 * 180.29218 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.6499 -4.4314 1.0986 14 7 3.4989 -5.2978 0.6261 15 8 3.6569 -5.1623 -0.5650 16 6 2.9076 -4.1628 -1.0509 17 1 -0.4850 0.8401 -0.0004 18 1 0.9637 -2.5270 -2.0367 19 1 -0.1578 -3.4144 -1.1880 20 1 2.3295 -4.3332 2.1253 21 1 2.8555 -3.8342 -2.0784 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592932.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = 61.011359 kcal Electronic energy + Delta-G solvation = -9345.686800 eV Core-core repulsion = 7418.110766 eV Total energy + Delta-G solvation = -1927.576034 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.21734 -35.41981 -32.60497 -31.57915 -29.95458 -26.22249 -23.26885 -22.15318 -19.83333 -17.29929 -16.95260 -16.29555 -14.74742 -14.34025 -13.96434 -12.99476 -12.63147 -12.27302 -11.32318 -10.97655 -10.84848 -10.66926 -10.13873 -9.69921 -9.33692 -8.52755 -8.42643 -7.24082 -5.94487 -4.10172 2.16875 3.03906 3.32089 3.37025 3.40366 3.93661 4.44334 5.01581 5.28969 5.51650 5.92024 6.19857 6.23226 6.35862 6.83938 7.35018 7.83659 8.09486 8.52120 8.86160 8.90569 9.05361 9.59196 11.09946 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.073332 B = 0.014604 C = 0.013492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.731482 B = 1916.840192 C = 2074.822024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.085 3.915 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.286 3.714 10 H 0.051 0.949 11 N -0.807 5.807 12 C -0.181 4.181 13 C -0.015 4.015 14 N -0.386 5.386 15 O 0.081 5.919 16 C -0.094 4.094 17 H 0.258 0.742 18 H 0.317 0.683 19 H 0.300 0.700 20 H 0.182 0.818 21 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -4.856 -1.670 5.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.176 3.824 10 H 0.069 0.931 11 N -0.332 5.332 12 C -0.187 4.187 13 C -0.193 4.193 14 N -0.091 5.091 15 O 0.015 5.985 16 C -0.175 4.175 17 H 0.068 0.932 18 H 0.129 0.871 19 H 0.110 0.890 20 H 0.200 0.800 21 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.946 -5.039 -0.859 5.899 hybrid contribution 0.506 0.810 -0.329 1.010 sum 3.452 -4.228 -1.188 5.586 Atomic orbital electron populations 1.70086 1.05695 1.26026 1.46246 1.24941 0.94670 0.98612 0.94035 0.86771 0.79704 0.83445 0.78603 1.20285 1.21259 1.20341 1.20781 0.92197 0.89387 1.55023 0.92900 1.17628 0.86453 0.87102 0.91233 0.93129 1.59192 1.27834 1.42102 1.04096 1.23559 1.03117 1.01016 0.91033 1.25024 0.97651 0.94343 1.02295 1.73732 1.19410 1.23262 0.92666 1.84672 1.52628 1.44011 1.17204 1.25546 0.97187 0.93134 1.01642 0.93236 0.87099 0.88983 0.80045 0.77732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.00 12.77 55.43 0.71 -23.30 14 2 C 0.08 2.30 5.39 -17.82 -0.10 2.21 14 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 14 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 14 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 7 C -0.54 -14.29 8.71 -34.44 -0.30 -14.59 14 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 14 9 C 0.29 6.82 3.14 -70.01 -0.22 6.60 14 10 H 0.05 1.32 8.14 -51.93 -0.42 0.90 14 11 N -0.81 -17.94 8.45 -6.65 -0.06 -18.00 14 12 C -0.18 -3.72 5.23 -104.42 -0.55 -4.27 14 13 C -0.01 -0.29 12.16 -17.06 -0.21 -0.49 14 14 N -0.39 -7.52 12.07 30.36 0.37 -7.15 14 15 O 0.08 1.49 11.20 17.17 0.19 1.68 14 16 C -0.09 -1.69 11.74 29.74 0.35 -1.34 14 17 H 0.26 7.02 8.31 -40.82 -0.34 6.68 14 18 H 0.32 6.56 8.37 -39.29 -0.33 6.23 14 19 H 0.30 5.93 9.06 -39.29 -0.36 5.58 14 20 H 0.18 3.11 8.06 -52.49 -0.42 2.69 14 21 H 0.21 3.03 7.80 -52.49 -0.41 2.62 14 LS Contribution 199.19 15.07 3.00 3.00 Total: -1.00 -29.25 199.19 -3.31 -32.56 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -1.48 Total: 7.20 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.02 Total: -11.88 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 1.02 Total: -48.44 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.19 Total: 1.68 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -29.25 -3.31 -32.56 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592932.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.568 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds