Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48506 * 109.47064 * 240.00155 * 3 2 1 5 5 H 1.48506 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47398 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.41382 * 128.00344 * 100.00214 * 12 9 7 14 14 N 1.30181 * 106.39527 * 179.97438 * 13 12 9 15 15 O 1.20919 * 111.60372 * 359.97438 * 14 13 12 16 16 C 1.34042 * 111.56680 * 359.76551 * 15 14 13 17 17 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 18 18 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 19 19 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 20 20 H 1.07997 * 126.80484 * 359.97438 * 13 12 9 21 21 H 1.07998 * 126.77422 * 180.29218 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.6499 -4.4314 1.0986 14 7 3.4989 -5.2978 0.6261 15 8 3.6569 -5.1623 -0.5650 16 6 2.9076 -4.1628 -1.0509 17 1 -0.4850 0.8401 -0.0004 18 1 0.9637 -2.5270 -2.0367 19 1 -0.1578 -3.4144 -1.1880 20 1 2.3295 -4.3332 2.1253 21 1 2.8555 -3.8342 -2.0784 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592932.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = 39.718014 kcal Electronic energy + Delta-G solvation = -9346.610148 eV Core-core repulsion = 7418.110766 eV Total energy + Delta-G solvation = -1928.499382 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -45.74158 -37.18935 -34.35364 -33.36385 -31.58658 -28.17278 -25.06171 -23.68464 -21.51901 -18.79490 -18.63831 -18.14888 -16.64005 -16.09837 -15.63361 -14.72250 -14.32601 -14.01141 -13.12823 -12.79046 -12.69464 -12.33535 -11.99524 -11.51431 -11.02405 -10.54861 -10.11714 -8.97260 -7.99275 -6.20804 0.68918 1.43431 1.46716 1.50309 1.56018 2.46362 2.51609 3.24981 3.51912 4.04475 4.34405 4.51758 4.63496 4.89443 5.23336 5.47216 5.75322 6.14668 6.63294 7.09540 7.25990 7.37663 7.52368 9.04229 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.073332 B = 0.014604 C = 0.013492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.731482 B = 1916.840192 C = 2074.822024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.039 3.961 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.046 0.954 9 C 0.294 3.706 10 H 0.018 0.982 11 N -0.817 5.817 12 C -0.211 4.211 13 C -0.019 4.019 14 N -0.395 5.395 15 O 0.088 5.912 16 C -0.066 4.066 17 H 0.257 0.743 18 H 0.328 0.672 19 H 0.315 0.685 20 H 0.197 0.803 21 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 -4.915 -2.361 6.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.064 0.936 9 C 0.184 3.816 10 H 0.036 0.964 11 N -0.344 5.344 12 C -0.218 4.218 13 C -0.197 4.197 14 N -0.100 5.100 15 O 0.023 5.977 16 C -0.147 4.147 17 H 0.066 0.934 18 H 0.140 0.860 19 H 0.126 0.874 20 H 0.214 0.786 21 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.773 -5.115 -1.553 6.543 hybrid contribution 0.262 0.768 -0.129 0.822 sum 4.035 -4.347 -1.682 6.165 Atomic orbital electron populations 1.70200 1.06972 1.26622 1.47529 1.25626 0.95384 1.01662 0.93856 0.85812 0.78471 0.79746 0.78613 1.19662 1.21100 1.20213 1.21083 0.92052 0.90957 1.54468 0.93619 1.17187 0.86524 0.87379 0.90559 0.96406 1.58957 1.28182 1.43317 1.03958 1.23210 1.04394 1.01508 0.92664 1.25281 0.97413 0.94031 1.03000 1.73735 1.19685 1.23500 0.93094 1.84675 1.52306 1.43851 1.16899 1.26033 0.94934 0.91426 1.02329 0.93409 0.85992 0.87389 0.78647 0.74482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.74 12.77 21.45 0.27 -49.47 14 2 C 0.04 2.09 5.39 84.65 0.46 2.55 14 3 Si 0.95 42.50 29.54 68.60 2.03 44.52 14 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 14 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 14 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 14 7 C -0.55 -28.90 8.71 25.60 0.22 -28.67 14 8 H 0.05 2.43 7.74 -2.91 -0.02 2.40 14 9 C 0.29 13.92 3.14 43.42 0.14 14.05 14 10 H 0.02 0.96 8.14 -2.39 -0.02 0.94 14 11 N -0.82 -35.51 8.45 -174.94 -1.48 -36.99 14 12 C -0.21 -8.40 5.23 -19.74 -0.10 -8.50 14 13 C -0.02 -0.72 12.16 85.71 1.04 0.32 14 14 N -0.39 -14.65 12.07 -59.25 -0.72 -15.37 14 15 O 0.09 3.01 11.20 71.62 0.80 3.81 14 16 C -0.07 -2.20 11.74 67.17 0.79 -1.41 14 17 H 0.26 13.98 8.31 -92.71 -0.77 13.21 14 18 H 0.33 12.96 8.37 -89.69 -0.75 12.21 14 19 H 0.31 12.09 9.06 -89.70 -0.81 11.28 14 20 H 0.20 6.55 8.06 -2.91 -0.02 6.53 14 21 H 0.24 6.13 7.80 -2.91 -0.02 6.10 14 Total: -1.00 -60.23 199.19 3.15 -57.08 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.30 Total: 18.08 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 2.54 Total: -21.66 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -1.92 Total: -101.83 kcal Atomic # 8 Polarization: 3.01 SS G_CDS: 0.80 Total: 3.81 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -60.23 3.15 -57.08 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592932.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.798 kcal (2) G-P(sol) polarization free energy of solvation -60.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds