Wall clock time and date at job start Mon Mar 30 2020 02:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34413 * 125.44800 * 2 1 4 4 C 1.35086 * 109.43861 * 180.17907 * 3 2 1 5 5 C 1.39710 * 126.14161 * 179.83153 * 4 3 2 6 6 H 1.07997 * 119.99993 * 173.86963 * 5 4 3 7 7 C 1.40130 * 119.99946 * 353.86936 * 5 4 3 8 8 N 1.30814 * 120.00040 * 6.01857 * 7 5 4 9 9 Si 1.86800 * 119.99648 * 186.01519 * 7 5 4 10 10 H 1.48501 * 109.47279 * 94.98483 * 9 7 5 11 11 H 1.48503 * 109.47092 * 214.98271 * 9 7 5 12 12 H 1.48498 * 109.47329 * 334.97985 * 9 7 5 13 13 C 1.39526 * 107.71127 * 359.56503 * 4 3 2 14 14 C 1.36169 * 125.44866 * 179.69780 * 2 1 3 15 15 O 1.36097 * 126.37019 * 359.96198 * 14 2 1 16 16 H 1.09006 * 109.46954 * 270.30477 * 1 2 3 17 17 H 1.08994 * 109.47416 * 30.30518 * 1 2 3 18 18 H 1.08998 * 109.47209 * 150.30435 * 1 2 3 19 19 H 0.97005 * 119.99765 * 179.97438 * 8 7 5 20 20 H 1.08001 * 126.75235 * 180.26543 * 13 4 3 21 21 H 0.96705 * 114.00100 * 270.01938 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2865 1.0950 0.0000 4 6 3.5850 0.7224 -0.0040 5 6 4.6882 1.5797 -0.0086 6 1 5.6855 1.1768 0.0884 7 6 4.5006 2.9622 -0.1389 8 7 3.2914 3.4612 -0.1379 9 14 5.9774 4.0926 -0.3141 10 1 6.2362 4.3496 -1.7536 11 1 5.7015 5.3781 0.3764 12 1 7.1686 3.4490 0.2958 13 6 3.6264 -0.6722 0.0035 14 6 2.2967 -1.1093 0.0059 15 8 1.8721 -2.4023 0.0134 16 1 -0.3633 0.0055 1.0277 17 1 -0.3634 0.8872 -0.5185 18 1 -0.3633 -0.8927 -0.5091 19 1 3.1616 4.4183 -0.2278 20 1 4.5106 -1.2924 0.0068 21 1 1.7495 -2.7709 0.8990 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259770904.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:45 Heat of formation + Delta-G solvation = -54.267913 kcal Electronic energy + Delta-G solvation = -9335.126167 eV Core-core repulsion = 7370.258498 eV Total energy + Delta-G solvation = -1964.867669 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.057 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.36382 -36.26407 -33.68771 -30.46730 -30.20548 -27.34475 -23.27058 -20.06212 -19.53282 -18.00334 -15.66408 -15.23279 -14.50092 -14.07938 -13.33711 -12.82190 -12.47301 -12.00046 -11.66806 -11.42445 -11.33674 -11.02989 -10.72528 -10.29124 -9.48122 -9.17931 -7.97677 -7.07191 -6.87836 -4.44934 2.87315 3.02338 3.07462 3.37232 3.84996 3.90047 4.82869 5.15865 5.49100 6.14445 6.34260 6.42591 6.61284 6.99536 7.09444 7.34091 7.55438 7.80261 8.00332 8.44831 8.65829 8.85692 9.22238 10.11504 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.090859 B = 0.014675 C = 0.012744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.096258 B = 1907.605898 C = 2196.537730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.177 4.177 3 O -0.147 6.147 4 C 0.216 3.784 5 C -0.445 4.445 6 H 0.104 0.896 7 C 0.067 3.933 8 N -0.777 5.777 9 Si 0.925 3.075 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.259 1.259 13 C -0.416 4.416 14 C 0.044 3.956 15 O -0.489 6.489 16 H 0.050 0.950 17 H 0.057 0.943 18 H 0.064 0.936 19 H 0.285 0.715 20 H 0.116 0.884 21 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -0.701 1.344 1.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.226 4.226 3 O -0.045 6.045 4 C 0.163 3.837 5 C -0.474 4.474 6 H 0.122 0.878 7 C -0.154 4.154 8 N -0.403 5.403 9 Si 0.748 3.252 10 H -0.192 1.192 11 H -0.200 1.200 12 H -0.183 1.183 13 C -0.437 4.437 14 C -0.001 4.001 15 O -0.295 6.295 16 H 0.069 0.931 17 H 0.076 0.924 18 H 0.083 0.917 19 H 0.095 0.905 20 H 0.134 0.866 21 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.987 -0.161 0.707 1.225 hybrid contribution 0.671 0.229 0.430 0.829 sum -0.316 0.068 1.137 1.183 Atomic orbital electron populations 1.19737 0.87984 1.01510 1.00586 1.21866 0.92907 0.85408 1.22400 1.84477 1.16113 1.30328 1.73574 1.19357 0.81615 0.90988 0.91732 1.18736 0.92404 0.90235 1.46050 0.87782 1.26147 0.97573 0.99261 0.92384 1.69792 1.22478 1.14905 1.33088 0.86018 0.80931 0.78826 0.79381 1.19197 1.19967 1.18255 1.21325 0.95350 0.94066 1.32955 1.18018 0.91852 0.82286 1.07972 1.84744 1.88766 1.24479 1.31521 0.93110 0.92439 0.91741 0.90460 0.86624 0.78301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.84 10.38 36.00 0.37 -0.47 14 2 C -0.18 -4.62 7.34 -35.05 -0.26 -4.88 14 3 O -0.15 -4.33 8.99 3.21 0.03 -4.30 14 4 C 0.22 6.29 6.78 -38.55 -0.26 6.03 14 5 C -0.44 -12.24 9.31 -38.32 -0.36 -12.60 14 6 H 0.10 2.66 7.86 -52.49 -0.41 2.25 14 7 C 0.07 1.73 5.49 -17.28 -0.09 1.63 14 8 N -0.78 -20.97 12.03 55.56 0.67 -20.30 14 9 Si 0.92 18.65 29.57 -169.99 -5.03 13.62 14 10 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 12 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 13 C -0.42 -11.50 10.95 -38.45 -0.42 -11.92 14 14 C 0.04 1.14 7.23 -39.68 -0.29 0.86 14 15 O -0.49 -10.79 13.62 -20.05 -0.27 -11.06 14 16 H 0.05 0.92 8.14 -51.93 -0.42 0.50 14 17 H 0.06 1.12 8.14 -51.93 -0.42 0.70 14 18 H 0.06 1.19 8.14 -51.93 -0.42 0.77 14 19 H 0.28 6.86 8.30 -40.82 -0.34 6.52 14 20 H 0.12 3.01 8.06 -52.49 -0.42 2.59 14 21 H 0.37 6.08 9.07 45.56 0.41 6.49 14 LS Contribution 200.70 15.07 3.02 3.02 Total: -1.00 -31.39 200.70 -3.71 -35.10 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -0.82 Total: 5.28 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -1.30 Total: -21.35 kcal Atomic # 7 Polarization: -20.97 SS G_CDS: 0.67 Total: -20.30 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.24 Total: -15.37 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -31.39 -3.71 -35.10 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770904.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.171 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds