Wall clock time and date at job start Mon Mar 30 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00663 * 2 1 4 4 H 1.48498 * 109.47465 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47298 * 300.00257 * 3 2 1 6 6 H 1.48503 * 109.47004 * 60.00071 * 3 2 1 7 7 C 1.37882 * 119.99293 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00282 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47100 * 299.99846 * 9 7 2 11 11 N 1.46897 * 109.47186 * 59.99874 * 9 7 2 12 12 C 1.50704 * 109.47213 * 180.02562 * 9 7 2 13 13 C 1.41375 * 126.80097 * 124.99960 * 12 9 7 14 14 C 1.35455 * 103.98439 * 179.97438 * 13 12 9 15 15 O 1.34035 * 106.44342 * 0.02562 * 14 13 12 16 16 N 1.20923 * 111.57389 * 359.97438 * 15 14 13 17 17 H 0.97009 * 119.99291 * 359.97438 * 1 2 3 18 18 H 1.00900 * 111.00198 * 296.04502 * 11 9 7 19 19 H 1.00891 * 111.00319 * 60.00525 * 11 9 7 20 20 H 1.08003 * 128.01339 * 359.96125 * 13 12 9 21 21 H 1.07999 * 126.78027 * 179.73618 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 1 0.6238 -2.5575 0.8880 11 7 0.4067 -2.5761 -1.2015 12 6 2.2300 -3.6447 -0.0015 13 6 2.2861 -4.7108 0.9254 14 6 3.3263 -5.4642 0.4953 15 8 3.8114 -4.8541 -0.5951 16 7 3.1917 -3.8487 -0.8548 17 1 -0.4849 0.8402 0.0004 18 1 -0.3006 -1.8566 -1.1927 19 1 0.9650 -2.5243 -2.0403 20 1 1.6475 -4.8843 1.7790 21 1 3.6953 -6.3742 0.9450 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259812006.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:11 Heat of formation + Delta-G solvation = 53.660764 kcal Electronic energy + Delta-G solvation = -9365.861362 eV Core-core repulsion = 7437.966583 eV Total energy + Delta-G solvation = -1927.894779 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -44.06286 -35.29064 -32.65687 -31.10115 -30.29256 -26.15203 -23.35072 -22.26842 -19.72254 -17.04239 -16.83869 -16.29016 -14.89604 -14.07915 -13.93122 -12.87343 -12.75279 -12.00053 -11.31077 -10.95707 -10.92910 -10.43473 -10.04439 -9.92761 -9.24806 -8.84205 -8.66441 -7.26123 -6.13047 -4.27424 2.25250 3.19997 3.24037 3.30278 3.37660 4.00993 4.32573 5.11167 5.27594 5.43044 5.93801 6.14757 6.33743 6.62116 6.90183 7.49319 7.73968 8.02553 8.61643 8.88270 9.08192 9.21762 9.43808 10.86322 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.074567 B = 0.014907 C = 0.013609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.409282 B = 1877.846427 C = 2056.959497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.277 3.723 10 H 0.057 0.943 11 N -0.848 5.848 12 C 0.068 3.932 13 C -0.232 4.232 14 C -0.091 4.091 15 O 0.079 5.921 16 N -0.366 5.366 17 H 0.266 0.734 18 H 0.358 0.642 19 H 0.317 0.683 20 H 0.162 0.838 21 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.482 -6.497 1.714 7.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.166 3.834 10 H 0.075 0.925 11 N -0.379 5.379 12 C -0.092 4.092 13 C -0.254 4.254 14 C -0.173 4.173 15 O 0.016 5.984 16 N -0.073 5.073 17 H 0.076 0.924 18 H 0.175 0.825 19 H 0.126 0.874 20 H 0.179 0.821 21 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.553 -6.460 0.918 7.429 hybrid contribution 0.379 1.567 0.735 1.771 sum 3.931 -4.893 1.653 6.491 Atomic orbital electron populations 1.69749 1.05840 1.27248 1.50628 1.25009 0.94997 0.99447 0.94268 0.86387 0.80157 0.82928 0.77677 1.19727 1.20829 1.20790 1.21849 0.93816 0.90930 1.51602 0.92429 1.17450 0.87567 0.86061 0.92324 0.92534 1.59404 1.18434 1.56095 1.03930 1.24343 0.96011 0.97981 0.90825 1.22781 1.01829 0.96773 1.04024 1.25778 0.98194 1.01419 0.91932 1.84815 1.47396 1.28556 1.37651 1.73783 1.08934 1.01120 1.23497 0.92418 0.82483 0.87385 0.82060 0.77906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 11.54 55.43 0.64 -24.32 14 2 C 0.07 1.80 5.38 -17.82 -0.10 1.70 14 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 14 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 14 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 14 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 14 7 C -0.54 -15.27 8.70 -34.44 -0.30 -15.56 14 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 14 9 C 0.28 7.23 3.22 -70.02 -0.23 7.00 14 10 H 0.06 1.55 8.14 -51.93 -0.42 1.12 14 11 N -0.85 -21.43 9.18 -6.65 -0.06 -21.49 14 12 C 0.07 1.60 6.08 -82.10 -0.50 1.10 14 13 C -0.23 -4.33 11.12 -39.38 -0.44 -4.77 14 14 C -0.09 -1.43 12.30 29.74 0.37 -1.07 14 15 O 0.08 1.52 11.20 17.19 0.19 1.71 14 16 N -0.37 -8.46 12.05 33.42 0.40 -8.06 14 17 H 0.27 7.03 8.31 -40.82 -0.34 6.69 14 18 H 0.36 9.42 7.08 -39.29 -0.28 9.14 14 19 H 0.32 7.99 8.98 -39.30 -0.35 7.64 14 20 H 0.16 2.57 8.06 -52.48 -0.42 2.15 14 21 H 0.20 2.02 8.06 -52.49 -0.42 1.60 14 LS Contribution 197.98 15.07 2.98 2.98 Total: -1.00 -29.83 197.98 -3.50 -33.33 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -1.44 Total: 10.95 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.19 Total: -11.60 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.98 Total: -53.87 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.19 Total: 1.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -29.83 -3.50 -33.33 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812006.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.991 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds