Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48498 * 109.47141 * 270.00311 * 3 2 1 5 5 H 1.48505 * 109.46875 * 30.00449 * 3 2 1 6 6 H 1.48499 * 109.47153 * 149.99916 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 N 1.30256 * 125.61996 * 254.99701 * 12 9 7 14 14 C 1.34483 * 108.70094 * 179.97438 * 13 12 9 15 15 C 1.34330 * 107.66772 * 0.02562 * 14 13 12 16 16 O 1.33972 * 125.61933 * 74.69129 * 12 9 7 17 17 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 18 18 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 19 19 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 20 20 H 1.07998 * 126.16755 * 179.97438 * 14 13 12 21 21 H 1.08001 * 126.44283 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 7 2.5152 -4.3983 -1.0262 14 6 3.4288 -5.3103 -0.6491 15 6 3.7043 -5.0990 0.6486 16 8 2.9561 -4.0516 1.0473 17 1 -0.4850 0.8399 0.0004 18 1 -0.1577 -3.4145 1.1881 19 1 0.9639 -2.5269 2.0367 20 1 3.8621 -6.0753 -1.2762 21 1 4.3983 -5.6602 1.2567 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816314.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = -3.535721 kcal Electronic energy + Delta-G solvation = -9361.464486 eV Core-core repulsion = 7431.089481 eV Total energy + Delta-G solvation = -1930.375005 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.09585 -36.63741 -35.53084 -33.63053 -30.56411 -28.19385 -24.90262 -23.31834 -21.84689 -18.80904 -18.24499 -17.20110 -16.70221 -16.26508 -15.78317 -14.95579 -14.47666 -13.97762 -13.42924 -12.80758 -12.72048 -12.25337 -12.08176 -11.45908 -11.42426 -10.63028 -9.73808 -9.27985 -8.08688 -6.32887 0.67125 1.45275 1.45407 1.55762 1.86247 2.07565 2.44680 3.15648 3.48568 4.18752 4.23333 4.30263 4.96844 5.03451 5.20441 5.45657 5.63990 5.91675 6.41480 6.82673 6.94134 7.09224 7.39744 8.95889 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.073826 B = 0.014958 C = 0.013815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.178504 B = 1871.499388 C = 2026.327585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.043 3.957 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.559 4.559 8 H 0.044 0.956 9 C 0.316 3.684 10 H 0.049 0.951 11 N -0.806 5.806 12 C 0.179 3.821 13 N -0.537 5.537 14 C -0.068 4.068 15 C -0.093 4.093 16 O -0.217 6.217 17 H 0.263 0.737 18 H 0.319 0.681 19 H 0.332 0.668 20 H 0.211 0.789 21 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -6.902 2.576 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.163 4.163 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.598 4.598 8 H 0.062 0.938 9 C 0.204 3.796 10 H 0.067 0.933 11 N -0.333 5.333 12 C -0.030 4.030 13 N -0.267 5.267 14 C -0.206 4.206 15 C -0.163 4.163 16 O -0.103 6.103 17 H 0.072 0.928 18 H 0.130 0.870 19 H 0.144 0.856 20 H 0.228 0.772 21 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 5.044 -6.022 1.770 8.052 hybrid contribution 1.248 -0.329 0.642 1.441 sum 6.292 -6.351 2.413 9.260 Atomic orbital electron populations 1.70183 1.07000 1.27294 1.46219 1.25645 0.95601 1.01915 0.93136 0.85553 0.78588 0.79034 0.78304 1.20020 1.20135 1.19669 1.20911 0.92061 0.90494 1.56325 0.93752 1.17644 0.85014 0.84991 0.91978 0.93320 1.58983 1.27344 1.43068 1.03865 1.29019 0.95741 0.98386 0.79851 1.70476 1.17699 1.08074 1.30496 1.23968 0.99369 1.01466 0.95777 1.25900 1.00609 0.91721 0.98048 1.84455 1.44631 1.40439 1.40764 0.92774 0.86964 0.85574 0.77197 0.72560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.29 12.77 21.45 0.27 -50.01 14 2 C 0.04 2.36 5.39 84.65 0.46 2.81 14 3 Si 0.96 43.55 29.54 68.60 2.03 45.57 14 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 14 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 14 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 14 7 C -0.56 -31.64 8.71 25.60 0.22 -31.42 14 8 H 0.04 2.55 7.74 -2.91 -0.02 2.53 14 9 C 0.32 16.55 3.16 43.42 0.14 16.69 14 10 H 0.05 2.83 8.14 -2.39 -0.02 2.81 14 11 N -0.81 -38.37 8.53 -174.95 -1.49 -39.86 14 12 C 0.18 8.42 7.08 88.34 0.63 9.04 14 13 N -0.54 -24.12 11.29 -303.82 -3.43 -27.55 14 14 C -0.07 -2.30 11.89 83.39 0.99 -1.31 14 15 C -0.09 -2.85 12.18 66.93 0.81 -2.03 14 16 O -0.22 -8.88 10.72 -3.77 -0.04 -8.92 14 17 H 0.26 14.30 8.31 -92.71 -0.77 13.53 14 18 H 0.32 13.43 9.06 -89.69 -0.81 12.62 14 19 H 0.33 15.08 8.93 -89.70 -0.80 14.28 14 20 H 0.21 5.09 8.06 -2.91 -0.02 5.06 14 21 H 0.26 4.56 8.06 -2.91 -0.02 4.53 14 Total: -1.00 -66.11 200.86 0.23 -65.88 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -0.35 Total: 21.11 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 3.25 Total: -6.22 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -4.65 Total: -117.42 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.04 Total: -8.92 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -66.11 0.23 -65.88 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816314.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.341 kcal (2) G-P(sol) polarization free energy of solvation -66.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds