Wall clock time and date at job start Mon Mar 30 2020 02:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47416 * 240.00489 * 3 2 1 5 5 H 1.48503 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47055 * 120.00126 * 3 2 1 7 7 C 1.37880 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.39812 * 125.85958 * 124.99865 * 10 9 7 12 12 C 1.35953 * 107.83599 * 179.97438 * 11 10 9 13 13 O 1.35760 * 126.19656 * 179.97438 * 12 11 10 14 14 N 1.35133 * 107.61055 * 359.97438 * 12 11 10 15 15 H 0.97006 * 126.03963 * 180.02562 * 14 12 11 16 16 N 1.30834 * 125.85430 * 304.97542 * 10 9 7 17 17 H 0.97000 * 120.00157 * 359.97438 * 1 2 3 18 18 H 1.08998 * 109.47706 * 60.00329 * 9 7 2 19 19 H 1.09001 * 109.47271 * 299.99938 * 9 7 2 20 20 H 1.08002 * 126.08586 * 359.95462 * 11 10 9 21 21 H 0.96694 * 113.99628 * 89.99552 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.2685 -4.6895 0.9277 12 6 3.2916 -5.5156 0.5828 13 8 3.6615 -6.6485 1.2331 14 7 3.8738 -5.0051 -0.5247 15 1 4.6315 -5.3839 -0.9974 16 7 3.1903 -3.8321 -0.8694 17 1 -0.4850 0.8400 0.0004 18 1 0.6240 -2.5568 -0.8903 19 1 0.6247 -2.5571 0.8897 20 1 1.6038 -4.8174 1.7692 21 1 3.2181 -7.4469 0.9154 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259850141.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:35 Heat of formation + Delta-G solvation = -2.913014 kcal Electronic energy + Delta-G solvation = -9042.479964 eV Core-core repulsion = 7112.131962 eV Total energy + Delta-G solvation = -1930.348002 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.15907 -38.22364 -35.42422 -33.10655 -30.17128 -29.50929 -25.50384 -22.50982 -20.78961 -19.91108 -18.45529 -17.61118 -16.54464 -15.87252 -15.06542 -14.86526 -14.36993 -13.93273 -13.43963 -12.79058 -12.62783 -12.57741 -11.91834 -11.62410 -11.15668 -10.58212 -10.07834 -9.55540 -8.18015 -6.27489 0.82462 1.42259 1.45631 1.53483 1.75388 1.88854 2.45697 3.15156 3.26274 3.96921 4.58966 4.71659 5.04329 5.31473 5.47685 5.65655 5.75911 6.13500 6.19211 6.75395 6.82499 6.95740 7.39312 8.93095 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.097453 B = 0.011325 C = 0.010776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.249351 B = 2471.910250 C = 2597.767231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.049 0.951 9 C 0.092 3.908 10 C 0.103 3.897 11 C -0.301 4.301 12 C 0.275 3.725 13 O -0.465 6.465 14 N -0.483 5.483 15 H 0.446 0.554 16 N -0.310 5.310 17 H 0.267 0.733 18 H 0.016 0.984 19 H 0.029 0.971 20 H 0.160 0.840 21 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -10.696 0.915 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.068 0.932 9 C 0.053 3.947 10 C -0.062 4.062 11 C -0.332 4.332 12 C 0.103 3.897 13 O -0.271 6.271 14 N -0.203 5.203 15 H 0.292 0.708 16 N -0.138 5.138 17 H 0.076 0.924 18 H 0.034 0.966 19 H 0.048 0.952 20 H 0.178 0.822 21 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.251 -9.882 0.295 11.697 hybrid contribution -0.057 -0.066 0.201 0.219 sum 6.194 -9.948 0.495 11.729 Atomic orbital electron populations 1.70041 1.07375 1.28063 1.51224 1.25843 0.95827 1.02854 0.94615 0.85503 0.78326 0.78311 0.78894 1.19751 1.20151 1.19464 1.21283 0.92946 0.91360 1.51042 0.93244 1.17592 0.91498 0.88580 0.97049 1.22713 0.94951 0.96176 0.92330 1.21371 1.05069 0.99609 1.07103 1.18561 0.92850 0.90502 0.87743 1.84843 1.69125 1.15796 1.57382 1.46835 1.29654 1.21051 1.22767 0.70796 1.77474 1.10705 1.01313 1.24264 0.92445 0.96596 0.95226 0.82232 0.71683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.70 14 2 C 0.01 0.41 5.46 84.66 0.46 0.87 14 3 Si 0.97 45.42 29.54 68.60 2.03 47.44 14 4 H -0.27 -12.55 7.11 99.48 0.71 -11.85 14 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 14 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 14 7 C -0.53 -31.27 9.07 25.60 0.23 -31.04 14 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 14 9 C 0.09 5.03 5.55 29.10 0.16 5.20 14 10 C 0.10 4.87 6.43 43.09 0.28 5.15 14 11 C -0.30 -11.58 10.75 22.12 0.24 -11.35 14 12 C 0.28 8.62 8.43 83.65 0.71 9.33 14 13 O -0.46 -10.20 13.65 -90.87 -1.24 -11.44 14 14 N -0.48 -15.86 7.36 -169.17 -1.25 -17.10 14 15 H 0.45 10.75 8.96 -213.33 -1.91 8.84 14 16 N -0.31 -13.86 12.65 -47.42 -0.60 -14.46 14 17 H 0.27 15.08 8.31 -92.71 -0.77 14.31 14 18 H 0.02 0.93 8.14 -2.39 -0.02 0.91 14 19 H 0.03 1.65 8.12 -2.39 -0.02 1.63 14 20 H 0.16 5.53 8.06 -2.91 -0.02 5.51 14 21 H 0.42 4.16 9.06 -74.06 -0.67 3.49 14 Total: -1.00 -70.63 201.89 -0.02 -70.64 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -1.32 Total: 2.46 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 2.08 Total: -21.84 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.56 Total: -87.26 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -1.24 Total: -11.44 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.63 -0.02 -70.64 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850141.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.731 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds