Wall clock time and date at job start Mon Mar 30 2020 01:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36260 * 126.58201 * 2 1 4 4 N 1.37477 * 125.35094 * 359.97438 * 3 2 1 5 5 N 1.31953 * 109.30092 * 180.02562 * 3 2 1 6 6 C 1.32899 * 110.01628 * 359.97438 * 5 3 2 7 7 C 1.38882 * 126.58519 * 180.02562 * 2 1 3 8 8 C 1.39905 * 126.97492 * 0.23708 * 7 2 1 9 9 H 1.08002 * 119.99973 * 359.70783 * 8 7 2 10 10 C 1.39909 * 120.00342 * 179.71477 * 8 7 2 11 11 N 1.30997 * 119.99576 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00373 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47040 * 89.99828 * 12 10 8 14 14 H 1.48500 * 109.47363 * 209.99392 * 12 10 8 15 15 H 1.48497 * 109.46954 * 329.99733 * 12 10 8 16 16 H 1.09004 * 109.46903 * 269.97230 * 1 2 3 17 17 H 1.09001 * 109.47643 * 29.97632 * 1 2 3 18 18 H 1.08998 * 109.47013 * 149.97571 * 1 2 3 19 19 H 0.97000 * 119.99496 * 180.02562 * 4 3 2 20 20 H 0.96999 * 119.99656 * 0.02562 * 4 3 2 21 21 H 1.07999 * 126.10256 * 180.02562 * 6 5 3 22 22 H 0.97002 * 119.99904 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2770 1.0942 0.0000 4 7 1.8507 2.4012 -0.0005 5 7 3.5370 0.7022 -0.0006 6 6 3.6004 -0.6253 -0.0004 7 6 2.2927 -1.1152 -0.0005 8 6 1.8968 -2.4570 -0.0057 9 1 0.8468 -2.7103 -0.0052 10 6 2.8608 -3.4709 -0.0115 11 7 4.1343 -3.1637 -0.0125 12 14 2.3322 -5.2625 -0.0178 13 1 2.1896 -5.7316 -1.4195 14 1 3.3563 -6.0833 0.6770 15 1 1.0305 -5.3969 0.6841 16 1 -0.3633 -0.0005 1.0277 17 1 -0.3634 0.8902 -0.5134 18 1 -0.3633 -0.8898 -0.5142 19 1 2.4989 3.1227 -0.0008 20 1 0.9016 2.6017 -0.0005 21 1 4.5024 -1.2193 -0.0003 22 1 4.8027 -3.8667 -0.0169 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856770.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:08 Heat of formation + Delta-G solvation = 56.894960 kcal Electronic energy + Delta-G solvation = -9321.433006 eV Core-core repulsion = 7491.397134 eV Total energy + Delta-G solvation = -1830.035872 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.68567 -33.85508 -32.52864 -32.39006 -27.86976 -25.61089 -23.83425 -19.92702 -18.90438 -16.96553 -16.07985 -14.95921 -14.79186 -14.25843 -13.53155 -12.35836 -12.26725 -11.93579 -11.36419 -11.20456 -10.96825 -10.49820 -10.11341 -9.68014 -8.80565 -8.03971 -7.94397 -6.44497 -6.29239 -3.90349 3.05801 3.16448 3.19784 3.89007 3.96807 4.20729 4.93684 5.01396 5.55706 5.61730 5.98524 6.11162 6.85665 7.24165 7.60362 7.67449 7.88189 8.38726 8.49500 8.71094 9.09779 9.25091 9.36746 10.19175 10.51853 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.084083 B = 0.016047 C = 0.013574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.923372 B = 1744.432778 C = 2062.208328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.516 5.516 3 C 0.356 3.644 4 N -0.858 5.858 5 N -0.528 5.528 6 C -0.122 4.122 7 C 0.154 3.846 8 C -0.439 4.439 9 H 0.066 0.934 10 C 0.067 3.933 11 N -0.811 5.811 12 Si 0.923 3.077 13 H -0.273 1.273 14 H -0.278 1.278 15 H -0.268 1.268 16 H 0.049 0.951 17 H 0.056 0.944 18 H 0.073 0.927 19 H 0.403 0.597 20 H 0.387 0.613 21 H 0.186 0.814 22 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 2.058 -0.075 6.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.216 5.216 3 C 0.009 3.991 4 N -0.413 5.413 5 N -0.256 5.256 6 C -0.267 4.267 7 C 0.045 3.955 8 C -0.475 4.475 9 H 0.084 0.916 10 C -0.147 4.147 11 N -0.440 5.440 12 Si 0.748 3.252 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.192 1.192 16 H 0.067 0.933 17 H 0.075 0.925 18 H 0.092 0.908 19 H 0.232 0.768 20 H 0.213 0.787 21 H 0.203 0.797 22 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.276 2.310 -0.072 5.760 hybrid contribution -1.269 -0.984 0.000 1.606 sum -6.545 1.327 -0.071 6.679 Atomic orbital electron populations 1.21395 0.80304 1.01980 1.00841 1.44963 1.04509 1.06590 1.65537 1.18941 0.86200 0.81359 1.12638 1.40146 1.08139 1.01860 1.91188 1.69663 1.14701 1.15838 1.25389 1.23145 0.97056 0.87001 1.19485 1.18759 0.88834 0.85571 1.02332 1.18188 0.93789 0.88213 1.47286 0.91574 1.25543 0.94326 1.00864 0.93983 1.69666 1.00856 1.34196 1.39304 0.86084 0.78917 0.81405 0.78759 1.19862 1.20352 1.19209 0.93287 0.92496 0.90848 0.76793 0.78687 0.79740 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.80 59.84 0.65 2.50 14 2 N -0.52 -12.81 3.24 -122.19 -0.40 -13.20 14 3 C 0.36 8.83 8.98 -319.80 -2.87 5.96 14 4 N -0.86 -15.88 9.01 30.18 0.27 -15.60 14 5 N -0.53 -14.98 11.21 -13.01 -0.15 -15.13 14 6 C -0.12 -3.65 10.86 -16.57 -0.18 -3.83 14 7 C 0.15 4.41 6.74 -83.52 -0.56 3.85 14 8 C -0.44 -12.14 9.04 -38.33 -0.35 -12.49 14 9 H 0.07 1.71 7.31 -52.49 -0.38 1.33 14 10 C 0.07 1.77 5.50 -17.28 -0.09 1.67 14 11 N -0.81 -22.25 10.33 55.55 0.57 -21.67 14 12 Si 0.92 19.62 29.56 -169.99 -5.03 14.59 14 13 H -0.27 -5.72 7.11 56.52 0.40 -5.31 14 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 14 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 14 16 H 0.05 0.84 8.14 -51.93 -0.42 0.42 14 17 H 0.06 0.87 7.48 -51.93 -0.39 0.48 14 18 H 0.07 1.34 7.51 -51.93 -0.39 0.95 14 19 H 0.40 6.72 8.95 -40.82 -0.37 6.35 14 20 H 0.39 5.83 8.03 -40.82 -0.33 5.50 14 21 H 0.19 5.72 5.74 -52.49 -0.30 5.42 14 22 H 0.27 6.86 8.30 -40.82 -0.34 6.53 14 LS Contribution 198.06 15.07 2.98 2.98 Total: -1.00 -32.43 198.06 -6.86 -39.29 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -1.71 Total: 11.09 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.41 Total: -2.35 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.30 Total: -65.61 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -32.43 -6.86 -39.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856770.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.188 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds