Wall clock time and date at job start Mon Mar 30 2020 02:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46869 * 2 1 4 4 N 1.30411 * 128.66028 * 270.02118 * 3 2 1 5 5 O 1.20769 * 109.95620 * 179.97438 * 4 3 2 6 6 N 1.20929 * 116.14796 * 359.68856 * 5 4 3 7 7 C 1.32750 * 108.87918 * 0.50134 * 6 5 4 8 8 C 1.41596 * 128.83595 * 179.82117 * 7 6 5 9 9 H 1.08002 * 120.00550 * 179.68023 * 8 7 6 10 10 C 1.40073 * 119.99685 * 359.39755 * 8 7 6 11 11 N 1.30704 * 120.00102 * 0.27960 * 10 8 7 12 12 Si 1.86803 * 119.99980 * 180.27395 * 10 8 7 13 13 H 1.48496 * 109.47191 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46534 * 120.00370 * 12 10 8 15 15 H 1.48498 * 109.47283 * 240.00313 * 12 10 8 16 16 H 1.08997 * 109.46899 * 60.00091 * 1 2 3 17 17 H 1.09006 * 109.46901 * 179.97438 * 1 2 3 18 18 H 1.08998 * 109.47468 * 299.99954 * 1 2 3 19 19 H 1.08999 * 109.47272 * 239.99531 * 2 1 3 20 20 H 1.08997 * 109.46899 * 119.99909 * 2 1 3 21 21 H 0.96996 * 120.00349 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3035 2.1890 -1.0183 5 8 2.6844 3.2677 -0.6311 6 7 2.7311 3.4173 0.5680 7 6 2.3405 2.2934 1.1567 8 6 2.2385 2.0041 2.5391 9 1 1.8957 1.0328 2.8637 10 6 2.5880 2.9758 3.4855 11 7 3.0029 4.1513 3.0927 12 14 2.4607 2.5917 5.3092 13 1 1.9692 1.2020 5.4892 14 1 3.7990 2.7284 5.9383 15 1 1.5134 3.5390 5.9497 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 1.8934 -0.5139 -0.8899 20 1 1.8933 -0.5138 0.8900 21 1 3.2446 4.8243 3.7481 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869770.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:06 Heat of formation + Delta-G solvation = 79.474491 kcal Electronic energy + Delta-G solvation = -9417.601693 eV Core-core repulsion = 7490.826281 eV Total energy + Delta-G solvation = -1926.775412 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -44.29636 -34.65196 -33.71204 -31.72869 -30.49017 -26.74294 -23.81546 -21.63433 -19.89050 -17.25337 -16.70220 -15.91192 -14.82337 -13.85517 -13.65149 -12.89493 -12.04345 -11.89111 -11.38564 -11.25717 -10.94668 -10.64202 -10.41850 -9.85803 -9.74479 -9.26547 -8.95207 -8.34987 -6.71736 -4.68471 2.93791 3.06523 3.10723 3.11523 3.78389 3.90940 5.15367 5.20020 5.49226 5.91730 5.96979 6.01385 6.18179 6.32585 6.59136 6.72463 6.99931 7.13012 7.33663 8.18464 8.42556 8.73484 10.26071 10.91797 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.054605 B = 0.018285 C = 0.014241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.647128 B = 1530.952111 C = 1965.746192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.084 4.084 4 N -0.399 5.399 5 O 0.251 5.749 6 N -0.428 5.428 7 C 0.155 3.845 8 C -0.431 4.431 9 H 0.092 0.908 10 C 0.069 3.931 11 N -0.762 5.762 12 Si 0.919 3.081 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.273 1.273 16 H 0.049 0.951 17 H 0.052 0.948 18 H 0.060 0.940 19 H 0.064 0.936 20 H 0.078 0.922 21 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -5.371 1.044 6.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 C -0.249 4.249 4 N -0.125 5.125 5 O 0.053 5.947 6 N -0.179 5.179 7 C 0.006 3.994 8 C -0.469 4.469 9 H 0.110 0.890 10 C -0.153 4.153 11 N -0.389 5.389 12 Si 0.743 3.257 13 H -0.183 1.183 14 H -0.198 1.198 15 H -0.198 1.198 16 H 0.068 0.932 17 H 0.071 0.929 18 H 0.079 0.921 19 H 0.082 0.918 20 H 0.096 0.904 21 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.202 -4.266 0.155 4.804 hybrid contribution -0.242 -0.735 1.545 1.728 sum -2.445 -5.001 1.700 5.820 Atomic orbital electron populations 1.21703 0.95330 1.00757 1.02262 1.19462 0.95217 0.88855 1.02024 1.25689 1.10186 0.99501 0.89496 1.74166 1.15071 0.96252 1.27003 1.84731 1.62589 1.26359 1.21020 1.76159 1.31603 1.22051 0.88112 1.22752 0.94988 0.86127 0.95563 1.18647 1.41207 1.00493 0.86602 0.89008 1.25934 0.93299 0.94327 1.01752 1.69852 1.29063 1.03504 1.36447 0.86076 0.78704 0.79755 0.81148 1.18300 1.19822 1.19814 0.93173 0.92852 0.92108 0.91759 0.90382 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.89 37.16 0.37 -2.00 14 2 C -0.02 -0.32 6.56 -27.88 -0.18 -0.50 14 3 C -0.08 -2.07 7.08 -79.13 -0.56 -2.63 14 4 N -0.40 -10.23 12.18 33.98 0.41 -9.81 14 5 O 0.25 6.89 11.64 27.28 0.32 7.20 14 6 N -0.43 -12.61 10.82 32.69 0.35 -12.25 14 7 C 0.15 4.34 7.15 -82.13 -0.59 3.75 14 8 C -0.43 -11.55 9.51 -37.61 -0.36 -11.91 14 9 H 0.09 2.24 7.85 -52.49 -0.41 1.83 14 10 C 0.07 1.78 5.50 -17.34 -0.10 1.69 14 11 N -0.76 -21.07 12.14 55.55 0.67 -20.39 14 12 Si 0.92 18.73 29.56 -169.99 -5.02 13.70 14 13 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 14 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 14 16 H 0.05 0.85 8.14 -51.93 -0.42 0.42 14 17 H 0.05 0.71 8.14 -51.93 -0.42 0.29 14 18 H 0.06 1.07 8.14 -51.93 -0.42 0.65 14 19 H 0.06 1.11 8.14 -51.93 -0.42 0.69 14 20 H 0.08 1.40 8.14 -51.93 -0.42 0.97 14 21 H 0.28 6.97 8.29 -40.82 -0.34 6.63 14 LS Contribution 200.20 15.07 3.02 3.02 Total: -1.00 -30.17 200.20 -3.32 -33.50 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -1.66 Total: -3.36 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.42 Total: -11.60 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 1.44 Total: -42.46 kcal Atomic # 8 Polarization: 6.89 SS G_CDS: 0.32 Total: 7.20 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -30.17 -3.32 -33.50 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869770.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.973 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds