Wall clock time and date at job start Mon Mar 30 2020 02:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36336 * 126.13809 * 2 1 4 4 N 1.30132 * 109.76773 * 180.02562 * 3 2 1 5 5 C 1.35976 * 109.27715 * 0.02562 * 4 3 2 6 6 C 1.40902 * 126.47913 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00158 * 185.71478 * 6 5 4 8 8 C 1.39573 * 119.99627 * 5.44236 * 6 5 4 9 9 N 1.31184 * 120.00202 * 354.28020 * 8 6 5 10 10 Si 1.86801 * 119.99935 * 174.28111 * 8 6 5 11 11 H 1.48504 * 109.47109 * 94.97795 * 10 8 6 12 12 H 1.48499 * 109.47433 * 214.98175 * 10 8 6 13 13 H 1.48505 * 109.46967 * 334.98193 * 10 8 6 14 14 C 1.36429 * 126.13981 * 180.28666 * 2 1 3 15 15 O 1.35253 * 126.90295 * 359.97438 * 14 2 1 16 16 H 1.08997 * 109.47484 * 90.01874 * 1 2 3 17 17 H 1.09001 * 109.46891 * 210.02121 * 1 2 3 18 18 H 1.08999 * 109.47557 * 330.01888 * 1 2 3 19 19 H 1.08005 * 125.11348 * 0.02763 * 3 2 1 20 20 H 0.97001 * 119.99500 * 180.02562 * 9 8 6 21 21 H 0.96693 * 114.00170 * 270.18570 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1010 0.0000 4 7 3.5175 0.7343 -0.0005 5 6 3.5865 -0.6237 -0.0015 6 6 4.7605 -1.4029 -0.0028 7 1 4.6957 -2.4768 -0.0966 8 6 6.0074 -0.7862 0.1114 9 7 6.0947 0.5227 0.1070 10 14 7.5519 -1.8248 0.2705 11 1 8.1624 -2.0126 -1.0701 12 1 8.5199 -1.1388 1.1636 13 1 7.2012 -3.1487 0.8445 14 6 2.2696 -1.1018 -0.0055 15 8 1.8751 -2.3955 -0.0115 16 1 -0.3634 -0.0003 -1.0276 17 1 -0.3633 -0.8898 0.5142 18 1 -0.3634 0.8901 0.5135 19 1 1.9218 2.1238 0.0004 20 1 6.9614 0.9511 0.1860 21 1 1.7580 -2.7750 0.8701 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889949.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:44 Heat of formation + Delta-G solvation = -8.333318 kcal Electronic energy + Delta-G solvation = -9386.982202 eV Core-core repulsion = 7456.399158 eV Total energy + Delta-G solvation = -1930.583044 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.82694 -37.53739 -35.58254 -33.78941 -29.93112 -27.89229 -26.05512 -21.94197 -21.56788 -19.02429 -18.36245 -16.94806 -16.53419 -15.86495 -15.18932 -14.75205 -14.32253 -13.42091 -13.34473 -13.06335 -12.78853 -12.37139 -12.11405 -11.69663 -11.11152 -9.97755 -9.84513 -8.89318 -8.26795 -6.09033 1.25642 1.42791 1.56869 1.61751 2.27396 2.38705 2.61483 3.60251 3.97649 4.20425 4.26387 4.54059 4.71254 5.00028 5.41687 5.71146 5.90642 6.27705 6.58469 6.93077 7.24494 7.40963 8.00518 8.68898 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.084220 B = 0.015934 C = 0.013523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.381422 B = 1756.826350 C = 2069.994702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.483 5.483 3 C 0.160 3.840 4 N -0.508 5.508 5 C 0.151 3.849 6 C -0.484 4.484 7 H 0.072 0.928 8 C 0.025 3.975 9 N -0.809 5.809 10 Si 0.985 3.015 11 H -0.267 1.267 12 H -0.269 1.269 13 H -0.260 1.260 14 C -0.054 4.054 15 O -0.455 6.455 16 H 0.068 0.932 17 H 0.075 0.925 18 H 0.107 0.893 19 H 0.227 0.773 20 H 0.273 0.727 21 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 -0.645 1.907 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.183 5.183 3 C -0.120 4.120 4 N -0.233 5.233 5 C 0.026 3.974 6 C -0.519 4.519 7 H 0.090 0.910 8 C -0.190 4.190 9 N -0.436 5.436 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.193 1.193 13 H -0.183 1.183 14 C -0.204 4.204 15 O -0.256 6.256 16 H 0.087 0.913 17 H 0.094 0.906 18 H 0.126 0.874 19 H 0.243 0.757 20 H 0.082 0.918 21 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.022 0.020 1.299 6.161 hybrid contribution -0.244 -0.971 0.542 1.139 sum -6.266 -0.951 1.841 6.599 Atomic orbital electron populations 1.21938 0.76124 1.04707 1.03143 1.45228 1.07550 1.06259 1.59268 1.25601 0.86394 0.93219 1.06833 1.71148 1.17405 1.12497 1.22250 1.18916 0.90950 0.89252 0.98281 1.18727 0.90196 0.93724 1.49236 0.91005 1.26742 1.03287 0.96294 0.92672 1.70299 1.26063 1.10735 1.36490 0.85165 0.76555 0.78747 0.78875 1.19176 1.19319 1.18341 1.19081 0.88814 0.80077 1.32463 1.84787 1.89248 1.19283 1.32295 0.91328 0.90621 0.87444 0.75694 0.91759 0.78495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 11.14 127.77 1.42 3.75 14 2 N -0.48 -20.78 3.17 -659.43 -2.09 -22.86 14 3 C 0.16 7.31 12.52 179.95 2.25 9.57 14 4 N -0.51 -29.54 9.51 -191.05 -1.82 -31.35 14 5 C 0.15 9.14 6.70 39.61 0.27 9.41 14 6 C -0.48 -29.48 9.35 23.24 0.22 -29.27 14 7 H 0.07 4.24 7.85 -2.91 -0.02 4.22 14 8 C 0.02 1.42 5.48 85.11 0.47 1.89 14 9 N -0.81 -48.23 11.96 21.78 0.26 -47.97 14 10 Si 0.99 42.72 29.56 68.60 2.03 44.75 14 11 H -0.27 -11.14 7.11 99.48 0.71 -10.43 14 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 14 13 H -0.26 -10.85 7.11 99.48 0.71 -10.14 14 14 C -0.05 -2.81 8.11 84.43 0.68 -2.13 14 15 O -0.45 -21.12 13.58 -85.37 -1.16 -22.28 14 16 H 0.07 1.78 8.14 -2.39 -0.02 1.76 14 17 H 0.08 1.99 8.14 -2.39 -0.02 1.97 14 18 H 0.11 2.22 8.14 -2.39 -0.02 2.20 14 19 H 0.23 7.65 8.06 -2.91 -0.02 7.63 14 20 H 0.27 14.78 8.30 -92.71 -0.77 14.01 14 21 H 0.36 13.35 9.06 -74.06 -0.67 12.68 14 Total: -1.00 -76.02 200.10 3.11 -72.91 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.58 Total: 13.59 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.31 Total: -6.78 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -3.64 Total: -102.19 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.16 Total: -22.28 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -76.02 3.11 -72.91 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889949.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.579 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds