Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99724 * 2 1 4 4 H 1.48495 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46988 * 299.99701 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99757 * 3 2 1 7 7 C 1.37875 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47154 * 180.02562 * 9 7 2 11 11 O 1.20758 * 119.99973 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99940 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.53000 * 117.50165 * 243.62141 * 13 12 10 15 15 C 1.52994 * 59.99907 * 252.50793 * 14 13 12 16 16 H 0.96992 * 120.00055 * 0.02562 * 1 2 3 17 17 H 1.08994 * 109.47192 * 60.00028 * 9 7 2 18 18 H 1.09004 * 109.46640 * 299.99847 * 9 7 2 19 19 H 1.09002 * 109.47060 * 299.99670 * 12 10 9 20 20 H 1.09001 * 109.47380 * 59.99758 * 12 10 9 21 21 H 1.09003 * 115.54795 * 29.32506 * 13 12 10 22 22 H 1.09001 * 117.49810 * 359.97438 * 14 13 12 23 23 H 1.08995 * 117.50134 * 145.01745 * 14 13 12 24 24 H 1.09004 * 117.49933 * 252.50827 * 15 14 13 25 25 H 1.09002 * 117.49788 * 107.49222 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2305 -3.6445 -0.0015 11 8 3.4178 -3.4238 -0.0009 12 6 1.7283 -5.0654 -0.0031 13 6 2.9182 -6.0270 -0.0031 14 6 3.0896 -6.9389 -1.2196 15 6 2.6180 -7.5226 0.1137 16 1 -0.4850 0.8400 -0.0004 17 1 0.6249 -2.5563 -0.8919 18 1 0.6242 -2.5574 0.8881 19 1 1.1217 -5.2373 0.8862 20 1 1.1236 -5.2360 -0.8938 21 1 3.8225 -5.6560 0.4795 22 1 2.3543 -6.8541 -2.0197 23 1 4.1067 -7.1680 -1.5376 24 1 3.3248 -8.1357 0.6729 25 1 1.5726 -7.8216 0.1905 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259890356.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = -30.789932 kcal Electronic energy + Delta-G solvation = -9161.782357 eV Core-core repulsion = 7333.765864 eV Total energy + Delta-G solvation = -1828.016493 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.67153 -36.58855 -32.92154 -30.00814 -28.07527 -23.60196 -22.23402 -20.42030 -18.55440 -16.38911 -15.57715 -14.94118 -14.38227 -14.14160 -13.55829 -13.00731 -12.10179 -11.95740 -11.39580 -11.11635 -11.09452 -10.76522 -10.60913 -10.21129 -9.96511 -9.73880 -9.25057 -8.43096 -8.27813 -6.04657 -4.05207 3.11333 3.32953 3.40061 3.48289 3.98878 4.45610 4.79962 5.05167 5.13554 5.32925 5.45066 5.72404 5.73924 5.91287 6.01472 6.08823 6.23612 6.54988 6.80225 7.26737 7.38057 7.94837 8.25324 8.76449 9.04939 9.59937 11.07457 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.112305 B = 0.009828 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 249.260965 B = 2848.288458 C = 3008.439383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.072 0.928 9 C -0.029 4.029 10 C 0.356 3.644 11 O -0.466 6.466 12 C -0.148 4.148 13 C -0.140 4.140 14 C -0.182 4.182 15 C -0.186 4.186 16 H 0.261 0.739 17 H 0.051 0.949 18 H 0.052 0.948 19 H 0.094 0.906 20 H 0.090 0.910 21 H 0.113 0.887 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -10.365 -0.389 10.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.090 0.910 9 C -0.065 4.065 10 C 0.233 3.767 11 O -0.340 6.340 12 C -0.186 4.186 13 C -0.158 4.158 14 C -0.219 4.219 15 C -0.223 4.223 16 H 0.070 0.930 17 H 0.069 0.931 18 H 0.070 0.930 19 H 0.112 0.888 20 H 0.108 0.892 21 H 0.131 0.869 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.195 -10.130 -0.390 10.372 hybrid contribution 0.166 0.839 -0.029 0.855 sum 2.362 -9.291 -0.418 9.596 Atomic orbital electron populations 1.69972 1.06054 1.26748 1.51213 1.25018 0.94884 0.99477 0.95184 0.86426 0.80327 0.83180 0.77503 1.19528 1.20994 1.20986 1.21252 0.94181 0.89731 1.50168 0.90957 1.19613 0.95195 0.92151 0.99579 1.25138 0.90882 0.91373 0.69330 1.90212 1.19974 1.87462 1.36366 1.21836 0.97599 0.95314 1.03814 1.22203 1.00872 0.90462 1.02300 1.22989 1.02190 1.04956 0.91727 1.22961 1.01849 0.96620 1.00908 0.92977 0.93082 0.93047 0.88829 0.89173 0.86947 0.88960 0.89167 0.89188 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 15 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.52 -15.05 8.92 -34.44 -0.31 -15.36 15 8 H 0.07 2.18 6.76 -52.48 -0.35 1.83 15 9 C -0.03 -0.73 5.40 -29.04 -0.16 -0.89 15 10 C 0.36 7.89 7.15 -29.04 -0.21 7.69 15 11 O -0.47 -11.64 14.67 6.00 0.09 -11.55 15 12 C -0.15 -2.45 5.92 -27.88 -0.17 -2.62 15 13 C -0.14 -2.17 5.41 -90.62 -0.49 -2.66 15 14 C -0.18 -2.40 10.18 -26.73 -0.27 -2.67 15 15 C -0.19 -2.28 10.25 -26.74 -0.27 -2.55 15 16 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 17 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15 18 H 0.05 1.33 8.14 -51.93 -0.42 0.90 15 19 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 20 H 0.09 1.35 7.87 -51.93 -0.41 0.94 15 21 H 0.11 1.93 7.31 -51.93 -0.38 1.55 15 22 H 0.09 1.15 8.03 -51.93 -0.42 0.73 15 23 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 LS Contribution 224.63 15.07 3.39 3.39 Total: -1.00 -31.14 224.63 -6.01 -37.15 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -3.23 Total: -2.64 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.97 Total: -17.57 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.14 -6.01 -37.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890356.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.364 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds