Wall clock time and date at job start Mon Mar 30 2020 02:20:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31524 * 1
3 3 Si 1.86802 * 119.99724 * 2 1
4 4 H 1.48495 * 109.47199 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.46988 * 299.99701 * 3 2 1
6 6 H 1.48498 * 109.47266 * 59.99757 * 3 2 1
7 7 C 1.37875 * 120.00101 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00180 * 0.02562 * 7 2 1
10 10 C 1.50697 * 109.47154 * 180.02562 * 9 7 2
11 11 O 1.20758 * 119.99973 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99940 * 180.02562 * 10 9 7
13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9
14 14 C 1.53000 * 117.50165 * 243.62141 * 13 12 10
15 15 C 1.52994 * 59.99907 * 252.50793 * 14 13 12
16 16 H 0.96992 * 120.00055 * 0.02562 * 1 2 3
17 17 H 1.08994 * 109.47192 * 60.00028 * 9 7 2
18 18 H 1.09004 * 109.46640 * 299.99847 * 9 7 2
19 19 H 1.09002 * 109.47060 * 299.99670 * 12 10 9
20 20 H 1.09001 * 109.47380 * 59.99758 * 12 10 9
21 21 H 1.09003 * 115.54795 * 29.32506 * 13 12 10
22 22 H 1.09001 * 117.49810 * 359.97438 * 14 13 12
23 23 H 1.08995 * 117.50134 * 145.01745 * 14 13 12
24 24 H 1.09004 * 117.49933 * 252.50827 * 15 14 13
25 25 H 1.09002 * 117.49788 * 107.49222 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8904 2.3964 -1.2126
6 1 1.8904 2.3965 1.2124
7 6 2.0046 -1.1940 -0.0005
8 1 3.0847 -1.1939 -0.0001
9 6 1.2512 -2.4991 -0.0017
10 6 2.2305 -3.6445 -0.0015
11 8 3.4178 -3.4238 -0.0009
12 6 1.7283 -5.0654 -0.0031
13 6 2.9182 -6.0270 -0.0031
14 6 3.0896 -6.9389 -1.2196
15 6 2.6180 -7.5226 0.1137
16 1 -0.4850 0.8400 -0.0004
17 1 0.6249 -2.5563 -0.8919
18 1 0.6242 -2.5574 0.8881
19 1 1.1217 -5.2373 0.8862
20 1 1.1236 -5.2360 -0.8938
21 1 3.8225 -5.6560 0.4795
22 1 2.3543 -6.8541 -2.0197
23 1 4.1067 -7.1680 -1.5376
24 1 3.3248 -8.1357 0.6729
25 1 1.5726 -7.8216 0.1905
RHF calculation, no. of doubly occupied orbitals= 31
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259890356.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:20:38
Heat of formation + Delta-G solvation = -30.789932 kcal
Electronic energy + Delta-G solvation = -9161.782357 eV
Core-core repulsion = 7333.765864 eV
Total energy + Delta-G solvation = -1828.016493 eV
No. of doubly occupied orbitals = 31
Molecular weight
(most abundant/longest-lived isotopes) = 168.089 amu
Computer time = 0.10 seconds
Orbital eigenvalues (eV)
-38.67153 -36.58855 -32.92154 -30.00814 -28.07527 -23.60196 -22.23402 -20.42030
-18.55440 -16.38911 -15.57715 -14.94118 -14.38227 -14.14160 -13.55829 -13.00731
-12.10179 -11.95740 -11.39580 -11.11635 -11.09452 -10.76522 -10.60913 -10.21129
-9.96511 -9.73880 -9.25057 -8.43096 -8.27813 -6.04657 -4.05207 3.11333
3.32953 3.40061 3.48289 3.98878 4.45610 4.79962 5.05167 5.13554
5.32925 5.45066 5.72404 5.73924 5.91287 6.01472 6.08823 6.23612
6.54988 6.80225 7.26737 7.38057 7.94837 8.25324 8.76449 9.04939
9.59937 11.07457
Molecular weight = 168.09amu
Principal moments of inertia in cm(-1)
A = 0.112305 B = 0.009828 C = 0.009305
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 249.260965 B = 2848.288458 C = 3008.439383
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.055 3.945
3 Si 0.898 3.102
4 H -0.271 1.271
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.515 4.515
8 H 0.072 0.928
9 C -0.029 4.029
10 C 0.356 3.644
11 O -0.466 6.466
12 C -0.148 4.148
13 C -0.140 4.140
14 C -0.182 4.182
15 C -0.186 4.186
16 H 0.261 0.739
17 H 0.051 0.949
18 H 0.052 0.948
19 H 0.094 0.906
20 H 0.090 0.910
21 H 0.113 0.887
22 H 0.092 0.908
23 H 0.090 0.910
24 H 0.090 0.910
25 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.708 -10.365 -0.389 10.512
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.146 4.146
3 Si 0.726 3.274
4 H -0.195 1.195
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.553 4.553
8 H 0.090 0.910
9 C -0.065 4.065
10 C 0.233 3.767
11 O -0.340 6.340
12 C -0.186 4.186
13 C -0.158 4.158
14 C -0.219 4.219
15 C -0.223 4.223
16 H 0.070 0.930
17 H 0.069 0.931
18 H 0.070 0.930
19 H 0.112 0.888
20 H 0.108 0.892
21 H 0.131 0.869
22 H 0.110 0.890
23 H 0.108 0.892
24 H 0.108 0.892
25 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 2.195 -10.130 -0.390 10.372
hybrid contribution 0.166 0.839 -0.029 0.855
sum 2.362 -9.291 -0.418 9.596
Atomic orbital electron populations
1.69972 1.06054 1.26748 1.51213 1.25018 0.94884 0.99477 0.95184
0.86426 0.80327 0.83180 0.77503 1.19528 1.20994 1.20986 1.21252
0.94181 0.89731 1.50168 0.90957 1.19613 0.95195 0.92151 0.99579
1.25138 0.90882 0.91373 0.69330 1.90212 1.19974 1.87462 1.36366
1.21836 0.97599 0.95314 1.03814 1.22203 1.00872 0.90462 1.02300
1.22989 1.02190 1.04956 0.91727 1.22961 1.01849 0.96620 1.00908
0.92977 0.93082 0.93047 0.88829 0.89173 0.86947 0.88960 0.89167
0.89188 0.88972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 15
2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 15
3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 15
4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15
5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15
6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15
7 C -0.52 -15.05 8.92 -34.44 -0.31 -15.36 15
8 H 0.07 2.18 6.76 -52.48 -0.35 1.83 15
9 C -0.03 -0.73 5.40 -29.04 -0.16 -0.89 15
10 C 0.36 7.89 7.15 -29.04 -0.21 7.69 15
11 O -0.47 -11.64 14.67 6.00 0.09 -11.55 15
12 C -0.15 -2.45 5.92 -27.88 -0.17 -2.62 15
13 C -0.14 -2.17 5.41 -90.62 -0.49 -2.66 15
14 C -0.18 -2.40 10.18 -26.73 -0.27 -2.67 15
15 C -0.19 -2.28 10.25 -26.74 -0.27 -2.55 15
16 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15
17 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15
18 H 0.05 1.33 8.14 -51.93 -0.42 0.90 15
19 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15
20 H 0.09 1.35 7.87 -51.93 -0.41 0.94 15
21 H 0.11 1.93 7.31 -51.93 -0.38 1.55 15
22 H 0.09 1.15 8.03 -51.93 -0.42 0.73 15
23 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15
24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15
25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15
LS Contribution 224.63 15.07 3.39 3.39
Total: -1.00 -31.14 224.63 -6.01 -37.15
By element:
Atomic # 1 Polarization: 0.59 SS G_CDS: -3.23 Total: -2.64 kcal
Atomic # 6 Polarization: -15.59 SS G_CDS: -1.97 Total: -17.57 kcal
Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal
Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 3.39 Total: 3.39 kcal
Total: -31.14 -6.01 -37.15 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259890356.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.364 kcal
(2) G-P(sol) polarization free energy of solvation -31.141 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.777 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.10 seconds