Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99724 * 2 1 4 4 H 1.48495 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46988 * 299.99701 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99757 * 3 2 1 7 7 C 1.37875 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47154 * 180.02562 * 9 7 2 11 11 O 1.20758 * 119.99973 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99940 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.53000 * 117.50165 * 243.62141 * 13 12 10 15 15 C 1.52994 * 59.99907 * 252.50793 * 14 13 12 16 16 H 0.96992 * 120.00055 * 0.02562 * 1 2 3 17 17 H 1.08994 * 109.47192 * 60.00028 * 9 7 2 18 18 H 1.09004 * 109.46640 * 299.99847 * 9 7 2 19 19 H 1.09002 * 109.47060 * 299.99670 * 12 10 9 20 20 H 1.09001 * 109.47380 * 59.99758 * 12 10 9 21 21 H 1.09003 * 115.54795 * 29.32506 * 13 12 10 22 22 H 1.09001 * 117.49810 * 359.97438 * 14 13 12 23 23 H 1.08995 * 117.50134 * 145.01745 * 14 13 12 24 24 H 1.09004 * 117.49933 * 252.50827 * 15 14 13 25 25 H 1.09002 * 117.49788 * 107.49222 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2305 -3.6445 -0.0015 11 8 3.4178 -3.4238 -0.0009 12 6 1.7283 -5.0654 -0.0031 13 6 2.9182 -6.0270 -0.0031 14 6 3.0896 -6.9389 -1.2196 15 6 2.6180 -7.5226 0.1137 16 1 -0.4850 0.8400 -0.0004 17 1 0.6249 -2.5563 -0.8919 18 1 0.6242 -2.5574 0.8881 19 1 1.1217 -5.2373 0.8862 20 1 1.1236 -5.2360 -0.8938 21 1 3.8225 -5.6560 0.4795 22 1 2.3543 -6.8541 -2.0197 23 1 4.1067 -7.1680 -1.5376 24 1 3.3248 -8.1357 0.6729 25 1 1.5726 -7.8216 0.1905 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259890356.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = -49.643579 kcal Electronic energy + Delta-G solvation = -9162.599913 eV Core-core repulsion = 7333.765864 eV Total energy + Delta-G solvation = -1828.834048 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.35226 -37.84000 -35.11617 -31.79951 -29.82264 -25.65637 -23.19966 -21.75207 -20.21825 -18.54481 -17.07598 -16.77014 -16.08349 -15.76547 -15.03270 -14.59741 -14.01144 -13.61969 -13.03731 -12.85593 -12.57266 -12.34750 -12.28071 -12.07049 -11.44698 -11.26880 -10.83909 -10.63990 -10.07019 -8.26427 -6.35038 1.33818 1.37431 1.37948 1.52608 2.38830 2.92441 3.07852 3.42748 3.88638 4.07610 4.20821 4.45571 4.71976 4.81316 4.81949 4.95785 5.07341 5.22862 5.29662 5.31425 5.39353 5.69476 6.12254 6.77488 6.97490 7.34382 8.85466 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.112305 B = 0.009828 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 249.260965 B = 2848.288458 C = 3008.439383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.053 0.947 9 C -0.033 4.033 10 C 0.360 3.640 11 O -0.500 6.500 12 C -0.132 4.132 13 C -0.172 4.172 14 C -0.182 4.182 15 C -0.158 4.158 16 H 0.267 0.733 17 H 0.045 0.955 18 H 0.046 0.954 19 H 0.115 0.885 20 H 0.112 0.888 21 H 0.087 0.913 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 -11.243 -0.498 11.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.071 0.929 9 C -0.070 4.070 10 C 0.238 3.762 11 O -0.377 6.377 12 C -0.169 4.169 13 C -0.191 4.191 14 C -0.218 4.218 15 C -0.195 4.195 16 H 0.076 0.924 17 H 0.063 0.937 18 H 0.064 0.936 19 H 0.133 0.867 20 H 0.130 0.870 21 H 0.105 0.895 22 H 0.120 0.880 23 H 0.113 0.887 24 H 0.122 0.878 25 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.929 -11.021 -0.498 11.199 hybrid contribution 0.228 1.102 0.005 1.126 sum 2.157 -9.918 -0.493 10.162 Atomic orbital electron populations 1.70044 1.07191 1.27995 1.51297 1.25820 0.95843 1.02854 0.94484 0.85435 0.78617 0.78964 0.78267 1.19935 1.19733 1.19716 1.21509 0.93669 0.92008 1.51164 0.92876 1.19589 0.95680 0.92795 0.98948 1.25307 0.89554 0.93365 0.67930 1.90198 1.21135 1.88347 1.38027 1.21696 0.98394 0.91007 1.05765 1.22070 0.99660 0.92282 1.05043 1.23123 1.03002 1.03708 0.92017 1.23074 1.03324 0.93558 0.99547 0.92411 0.93683 0.93641 0.86681 0.86992 0.89459 0.88008 0.88692 0.87776 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.66 15 2 C 0.01 0.49 5.46 84.65 0.46 0.95 15 3 Si 0.96 45.69 29.54 68.60 2.03 47.71 15 4 H -0.27 -13.09 7.11 99.48 0.71 -12.38 15 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 7 C -0.55 -32.52 8.92 25.60 0.23 -32.29 15 8 H 0.05 3.31 6.76 -2.91 -0.02 3.29 15 9 C -0.03 -1.72 5.40 29.10 0.16 -1.57 15 10 C 0.36 16.02 7.15 29.10 0.21 16.23 15 11 O -0.50 -25.58 14.67 -1.45 -0.02 -25.60 15 12 C -0.13 -4.13 5.92 29.85 0.18 -3.96 15 13 C -0.17 -5.04 5.41 -10.80 -0.06 -5.09 15 14 C -0.18 -4.33 10.18 30.59 0.31 -4.02 15 15 C -0.16 -3.33 10.25 30.59 0.31 -3.01 15 16 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 17 H 0.05 2.37 8.14 -2.39 -0.02 2.35 15 18 H 0.05 2.39 8.14 -2.39 -0.02 2.37 15 19 H 0.12 3.13 8.14 -2.39 -0.02 3.11 15 20 H 0.11 3.06 7.87 -2.39 -0.02 3.04 15 21 H 0.09 3.00 7.31 -2.39 -0.02 2.98 15 22 H 0.10 2.23 8.03 -2.39 -0.02 2.21 15 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.10 1.91 8.14 -2.38 -0.02 1.89 15 25 H 0.11 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -66.88 224.63 5.25 -61.63 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.16 Total: 3.68 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 1.80 Total: -32.76 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.02 Total: -25.60 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -66.88 5.25 -61.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890356.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.990 kcal (2) G-P(sol) polarization free energy of solvation -66.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds