Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00351 * 2 1 4 4 H 1.48499 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47254 * 300.00421 * 3 2 1 6 6 H 1.48500 * 109.46640 * 60.00141 * 3 2 1 7 7 C 1.37876 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.29829 * 118.35624 * 94.73242 * 10 9 7 12 12 C 1.50303 * 122.89009 * 180.65000 * 11 10 9 13 13 C 1.53085 * 109.72195 * 343.50617 * 12 11 10 14 14 N 1.47250 * 108.46981 * 48.96153 * 13 12 11 15 15 C 1.46836 * 110.20503 * 291.19715 * 14 13 12 16 16 H 0.97005 * 119.99724 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46443 * 60.00484 * 9 7 2 18 18 H 1.09002 * 109.47133 * 300.00257 * 9 7 2 19 19 H 1.07996 * 118.55295 * 0.65329 * 11 10 9 20 20 H 1.08997 * 109.43146 * 223.42904 * 12 11 10 21 21 H 1.09002 * 109.38713 * 103.55500 * 12 11 10 22 22 H 1.08997 * 109.63700 * 289.27050 * 13 12 11 23 23 H 1.09000 * 109.80826 * 168.75722 * 13 12 11 24 24 H 1.00897 * 110.99328 * 54.58517 * 14 13 12 25 25 H 1.08995 * 109.33660 * 290.68041 * 15 14 13 26 26 H 1.08998 * 109.33779 * 171.17199 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.5591 -4.1746 1.1381 12 6 3.5361 -5.3106 1.2577 13 6 3.7285 -5.9725 -0.1091 14 7 3.9890 -4.9195 -1.1049 15 6 2.7811 -4.1119 -1.3168 16 1 -0.4850 0.8401 0.0004 17 1 0.6239 -2.5567 -0.8904 18 1 0.6245 -2.5571 0.8897 19 1 2.1111 -3.7820 2.0389 20 1 3.1529 -6.0454 1.9657 21 1 4.4930 -4.9288 1.6136 22 1 2.8258 -6.5192 -0.3817 23 1 4.5748 -6.6585 -0.0715 24 1 4.7663 -4.3408 -0.8241 25 1 2.0303 -4.7132 -1.8293 26 1 3.0286 -3.2468 -1.9319 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259900436.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = -1.427771 kcal Electronic energy + Delta-G solvation = -9369.257260 eV Core-core repulsion = 7640.232668 eV Total energy + Delta-G solvation = -1729.024592 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.32565 -33.60051 -31.60288 -30.67679 -26.93873 -23.53955 -23.30102 -21.26722 -17.38368 -16.31168 -15.51058 -14.57136 -14.28345 -13.58269 -13.31757 -12.58822 -12.14775 -11.84427 -11.35230 -11.18675 -10.90168 -10.83301 -10.61284 -10.34636 -9.55511 -9.43154 -8.43165 -7.98254 -7.81490 -6.03775 -4.07334 3.11593 3.28690 3.36539 3.41445 4.44224 4.72648 5.30646 5.33173 5.51422 5.64491 5.77163 6.01121 6.11540 6.24097 6.30108 6.39545 6.76553 7.29115 7.38704 7.45252 7.60707 7.73929 7.92469 8.08187 8.35251 8.98499 9.56555 11.06479 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.077416 B = 0.012196 C = 0.011892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.596564 B = 2295.361116 C = 2354.024438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.111 4.111 11 C -0.209 4.209 12 C -0.117 4.117 13 C 0.054 3.946 14 N -0.685 5.685 15 C 0.089 3.911 16 H 0.261 0.739 17 H 0.024 0.976 18 H 0.022 0.978 19 H 0.100 0.900 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.339 0.661 25 H 0.076 0.924 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 -7.503 0.158 9.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.009 3.991 10 C -0.112 4.112 11 C -0.227 4.227 12 C -0.156 4.156 13 C -0.076 4.076 14 N -0.312 5.312 15 C -0.040 4.040 16 H 0.071 0.929 17 H 0.042 0.958 18 H 0.040 0.960 19 H 0.118 0.882 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.155 0.845 25 H 0.094 0.906 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.481 -7.810 -0.419 9.550 hybrid contribution 0.276 1.592 1.033 1.918 sum 5.757 -6.218 0.614 8.496 Atomic orbital electron populations 1.69974 1.06065 1.26632 1.50755 1.25030 0.94878 0.99281 0.95280 0.86495 0.80088 0.83588 0.77629 1.19724 1.20903 1.20985 1.21101 0.92949 0.90117 1.50639 0.92645 1.18367 0.92831 0.90079 0.97803 1.22253 0.98174 0.96161 0.94660 1.21728 1.02970 0.99973 0.98047 1.21032 0.98742 0.97296 0.98513 1.22071 1.01228 0.94421 0.89845 1.61194 1.07427 1.16040 1.46578 1.20887 0.91319 0.96605 0.95148 0.92942 0.95813 0.95954 0.88234 0.91843 0.92106 0.91221 0.91259 0.84484 0.90621 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.20 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 15 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 7 C -0.51 -14.48 9.09 -34.44 -0.31 -14.79 15 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 15 9 C 0.05 1.23 5.01 -29.03 -0.15 1.08 15 10 C -0.11 -2.41 5.10 -101.01 -0.51 -2.92 15 11 C -0.21 -4.18 9.50 -35.89 -0.34 -4.52 15 12 C -0.12 -1.84 6.22 -28.03 -0.17 -2.01 15 13 C 0.05 0.80 6.65 -3.59 -0.02 0.77 15 14 N -0.69 -11.24 6.98 -115.10 -0.80 -12.04 15 15 C 0.09 1.69 6.45 -5.28 -0.03 1.66 15 16 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 17 H 0.02 0.65 8.12 -51.93 -0.42 0.23 15 18 H 0.02 0.63 7.84 -51.93 -0.41 0.22 15 19 H 0.10 2.10 7.81 -52.49 -0.41 1.69 15 20 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.07 1.03 8.08 -51.93 -0.42 0.61 15 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.34 5.37 8.78 -39.29 -0.34 5.03 15 25 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 26 H 0.09 1.74 8.14 -51.93 -0.42 1.32 15 LS Contribution 221.99 15.07 3.35 3.35 Total: -1.00 -29.63 221.99 -7.04 -36.67 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -3.66 Total: 0.71 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.64 Total: -19.21 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.07 Total: -38.23 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.63 -7.04 -36.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900436.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.244 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds