Wall clock time and date at job start Mon Mar 30 2020 02:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99904 * 2 1 4 4 H 1.48496 * 109.46864 * 239.99403 * 3 2 1 5 5 H 1.48499 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47090 * 119.99196 * 3 2 1 7 7 C 1.37875 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00127 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47486 * 300.00342 * 9 7 2 11 11 N 1.46899 * 109.47138 * 60.00037 * 9 7 2 12 12 C 1.50701 * 109.47449 * 179.97438 * 9 7 2 13 13 C 1.34327 * 126.16390 * 124.99829 * 12 9 7 14 14 O 1.34754 * 107.11189 * 180.02562 * 13 12 9 15 15 C 1.33964 * 107.75643 * 359.97438 * 14 13 12 16 16 N 1.30258 * 108.75916 * 0.02562 * 15 14 13 17 17 H 0.96996 * 119.99643 * 0.02562 * 1 2 3 18 18 H 1.00907 * 110.99679 * 296.04373 * 11 9 7 19 19 H 1.00899 * 111.00198 * 59.99775 * 11 9 7 20 20 H 1.08001 * 126.44712 * 0.06545 * 13 12 9 21 21 H 1.08000 * 125.62653 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8902 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.2727 -4.6513 0.8889 14 8 3.2925 -5.4552 0.5289 15 6 3.8565 -4.9331 -0.5683 16 7 3.2195 -3.8431 -0.8886 17 1 -0.4849 0.8400 -0.0004 18 1 -0.3004 -1.8577 -1.1911 19 1 0.9653 -2.5260 -2.0381 20 1 1.6130 -4.7906 1.7326 21 1 4.7009 -5.3472 -1.0994 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259900635.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:59 Heat of formation + Delta-G solvation = 17.679241 kcal Electronic energy + Delta-G solvation = -9338.458821 eV Core-core repulsion = 7409.003766 eV Total energy + Delta-G solvation = -1929.455055 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.48849 -35.26789 -33.29106 -31.11809 -28.99488 -25.91967 -22.93806 -21.89561 -19.88301 -16.83076 -16.42164 -15.67652 -14.88068 -14.41026 -13.74720 -13.31130 -12.79003 -11.91296 -11.18672 -10.90396 -10.81170 -10.40621 -9.96358 -9.86918 -9.62952 -8.60954 -8.11267 -7.16799 -6.05515 -4.19137 2.24843 3.28460 3.32458 3.36178 3.57832 3.63725 4.38036 4.91454 5.18687 5.90256 5.92645 6.45078 6.63128 6.70767 7.15565 7.50695 7.81301 8.11830 8.60149 8.70675 8.97290 9.17378 9.51188 10.93418 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.074457 B = 0.014812 C = 0.013531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.966349 B = 1889.947802 C = 2068.793170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.057 0.943 9 C 0.278 3.722 10 H 0.052 0.948 11 N -0.848 5.848 12 C 0.048 3.952 13 C -0.108 4.108 14 O -0.221 6.221 15 C 0.136 3.864 16 N -0.468 5.468 17 H 0.266 0.734 18 H 0.356 0.644 19 H 0.319 0.681 20 H 0.207 0.793 21 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -5.981 0.476 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.075 0.925 9 C 0.168 3.832 10 H 0.069 0.931 11 N -0.378 5.378 12 C -0.072 4.072 13 C -0.178 4.178 14 O -0.108 6.108 15 C -0.090 4.090 16 N -0.198 5.198 17 H 0.076 0.924 18 H 0.172 0.828 19 H 0.128 0.872 20 H 0.223 0.777 21 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.880 -6.242 0.273 7.354 hybrid contribution 0.794 1.505 0.390 1.746 sum 4.674 -4.736 0.664 6.687 Atomic orbital electron populations 1.69731 1.05804 1.27288 1.51000 1.25008 0.94971 0.99330 0.94553 0.86521 0.79495 0.82467 0.78723 1.20195 1.21228 1.20269 1.21755 0.93803 0.90897 1.51024 0.92500 1.17402 0.87376 0.86432 0.92007 0.93062 1.59403 1.18396 1.55867 1.04182 1.22514 0.96035 0.97652 0.90999 1.24703 0.94510 0.93566 1.05028 1.84360 1.38639 1.48004 1.39800 1.27958 1.01081 0.92443 0.87541 1.70361 1.07048 1.14817 1.27547 0.92449 0.82773 0.87197 0.77675 0.74610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.13 11.54 55.43 0.64 -24.49 14 2 C 0.06 1.74 5.38 -17.82 -0.10 1.65 14 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 14 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 14 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 14 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 7 C -0.53 -15.01 8.70 -34.44 -0.30 -15.31 14 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 14 9 C 0.28 7.22 3.19 -70.02 -0.22 7.00 14 10 H 0.05 1.39 8.11 -51.93 -0.42 0.97 14 11 N -0.85 -21.38 9.18 -6.65 -0.06 -21.44 14 12 C 0.05 1.11 5.85 -82.81 -0.48 0.63 14 13 C -0.11 -2.11 12.06 29.35 0.35 -1.76 14 14 O -0.22 -3.95 10.78 5.36 0.06 -3.90 14 15 C 0.14 2.34 13.23 52.10 0.69 3.03 14 16 N -0.47 -10.30 11.28 -11.18 -0.13 -10.43 14 17 H 0.27 7.10 8.31 -40.82 -0.34 6.76 14 18 H 0.36 9.37 7.08 -39.29 -0.28 9.09 14 19 H 0.32 8.04 8.98 -39.29 -0.35 7.68 14 20 H 0.21 3.30 8.06 -52.49 -0.42 2.88 14 21 H 0.24 2.65 8.06 -52.49 -0.42 2.23 14 LS Contribution 198.39 15.07 2.99 2.99 Total: -1.00 -30.40 198.39 -3.02 -33.42 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -1.44 Total: 12.07 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.06 Total: -4.77 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.45 Total: -56.36 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: 0.06 Total: -3.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -30.40 -3.02 -33.42 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900635.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.103 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds