Wall clock time and date at job start Mon Mar 30 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99619 * 2 1 4 4 H 1.48505 * 109.47086 * 90.00212 * 3 2 1 5 5 H 1.48501 * 109.47100 * 329.99861 * 3 2 1 6 6 H 1.48503 * 109.46624 * 209.99888 * 3 2 1 7 7 C 1.37873 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99959 * 6.64022 * 7 2 1 9 9 C 1.50697 * 120.00332 * 186.64098 * 7 2 1 10 10 H 1.08993 * 109.47174 * 305.17058 * 9 7 2 11 11 N 1.46900 * 109.47319 * 65.16975 * 9 7 2 12 12 C 1.50697 * 109.47389 * 185.16728 * 9 7 2 13 13 C 1.34334 * 126.44489 * 99.71185 * 12 9 7 14 14 N 1.34473 * 107.67124 * 179.88068 * 13 12 9 15 15 C 1.30252 * 108.70115 * 0.39219 * 14 13 12 16 16 O 1.33968 * 108.76108 * 359.76081 * 15 14 13 17 17 H 0.97006 * 119.99537 * 174.93542 * 1 2 3 18 18 H 1.00902 * 111.00097 * 293.97102 * 11 9 7 19 19 H 1.00906 * 111.00181 * 57.91993 * 11 9 7 20 20 H 1.08001 * 126.15933 * 359.97438 * 13 12 9 21 21 H 1.08004 * 125.62401 * 179.77897 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4464 2.6527 -0.7001 6 1 3.5466 1.4402 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4700 -2.1263 -0.1072 9 6 3.5040 -1.1982 0.1515 10 1 3.9478 -0.5601 -0.6126 11 7 3.8636 -0.6911 1.4824 12 6 4.0208 -2.6050 -0.0065 13 6 4.5707 -3.1336 -1.1123 14 7 4.8991 -4.4079 -0.8356 15 6 4.5595 -4.6691 0.3944 16 8 4.0128 -3.5710 0.9329 17 1 -0.4850 -0.8369 -0.0742 18 1 3.6153 0.2822 1.5778 19 1 3.4360 -1.2461 2.2086 20 1 4.7231 -2.6260 -2.0533 21 1 4.6962 -5.6150 0.8975 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259908406.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:50 Heat of formation + Delta-G solvation = 17.306205 kcal Electronic energy + Delta-G solvation = -9404.107326 eV Core-core repulsion = 7474.636094 eV Total energy + Delta-G solvation = -1929.471231 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.57731 -35.20521 -33.99038 -31.98328 -29.24757 -25.89702 -22.78995 -21.90391 -20.00489 -17.93256 -16.96947 -15.78009 -15.38247 -14.14032 -13.80078 -13.29917 -12.80411 -12.53212 -11.96701 -11.53488 -10.70659 -10.66940 -10.15865 -9.99698 -9.40044 -8.78083 -8.25587 -7.75451 -6.65394 -4.44871 2.26850 3.17284 3.26042 3.36176 3.38637 3.52475 4.21412 4.81759 4.99433 5.53019 5.81327 5.98027 6.20766 6.59814 6.83946 6.99174 7.46882 7.96288 8.10790 8.25424 8.35055 8.60579 9.29979 10.66207 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.078126 B = 0.015723 C = 0.014996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.310558 B = 1780.430400 C = 1866.760405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.033 3.967 3 Si 1.047 2.953 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.630 4.630 8 H 0.059 0.941 9 C 0.250 3.750 10 H 0.074 0.926 11 N -0.851 5.851 12 C 0.046 3.954 13 C -0.086 4.086 14 N -0.487 5.487 15 C 0.124 3.876 16 O -0.200 6.200 17 H 0.271 0.729 18 H 0.327 0.673 19 H 0.337 0.663 20 H 0.175 0.825 21 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -2.436 1.412 7.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.174 4.174 3 Si 0.874 3.126 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.670 4.670 8 H 0.077 0.923 9 C 0.140 3.860 10 H 0.092 0.908 11 N -0.383 5.383 12 C -0.009 4.009 13 C -0.224 4.224 14 N -0.217 5.217 15 C -0.102 4.102 16 O -0.085 6.085 17 H 0.082 0.918 18 H 0.141 0.859 19 H 0.148 0.852 20 H 0.193 0.807 21 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.725 -1.397 0.904 7.902 hybrid contribution -1.297 -1.292 0.385 1.871 sum 6.428 -2.689 1.289 7.086 Atomic orbital electron populations 1.70796 1.06648 1.31040 1.44295 1.25891 0.96434 1.02444 0.92646 0.83940 0.75435 0.75492 0.77729 1.20398 1.20716 1.19864 1.22626 0.90753 0.96005 1.57576 0.92261 1.18220 0.94904 0.82755 0.90129 0.90805 1.59617 1.66334 1.06813 1.05517 1.24110 0.97706 0.92112 0.86965 1.22793 1.07637 0.91336 1.00661 1.70254 1.20820 1.16015 1.14608 1.27691 0.99653 0.92437 0.90450 1.84425 1.62264 1.20155 1.41620 0.91824 0.85864 0.85185 0.80736 0.74594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.70 55.43 0.76 -25.71 14 2 C 0.03 0.90 5.46 -17.82 -0.10 0.81 14 3 Si 1.05 23.41 25.54 -169.99 -4.34 19.06 14 4 H -0.28 -5.78 6.93 56.52 0.39 -5.38 14 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 14 6 H -0.27 -5.67 6.37 56.52 0.36 -5.31 14 7 C -0.63 -17.19 9.07 -34.44 -0.31 -17.50 14 8 H 0.06 1.80 7.98 -52.48 -0.42 1.38 14 9 C 0.25 5.89 2.70 -70.02 -0.19 5.70 14 10 H 0.07 1.71 6.62 -51.93 -0.34 1.37 14 11 N -0.85 -18.48 9.19 -6.65 -0.06 -18.54 14 12 C 0.05 1.03 6.14 -35.69 -0.22 0.81 14 13 C -0.09 -1.80 11.80 -17.77 -0.21 -2.01 14 14 N -0.49 -9.67 11.29 -14.97 -0.17 -9.84 14 15 C 0.12 2.17 13.23 52.09 0.69 2.86 14 16 O -0.20 -4.17 10.76 5.36 0.06 -4.11 14 17 H 0.27 8.08 8.72 -40.82 -0.36 7.72 14 18 H 0.33 6.89 5.47 -39.29 -0.21 6.67 14 19 H 0.34 7.23 8.96 -39.29 -0.35 6.88 14 20 H 0.18 3.25 8.06 -52.49 -0.42 2.82 14 21 H 0.24 2.74 8.06 -52.48 -0.42 2.32 14 LS Contribution 193.14 15.07 2.91 2.91 Total: -1.00 -30.49 193.14 -2.56 -33.05 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -1.38 Total: 12.52 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.34 Total: -9.34 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.53 Total: -54.09 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: 0.06 Total: -4.11 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.34 Total: 19.06 kcal Total LS contribution 2.91 Total: 2.91 kcal Total: -30.49 -2.56 -33.05 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908406.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.358 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds