Wall clock time and date at job start Mon Mar 30 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99619 * 2 1 4 4 H 1.48505 * 109.47086 * 90.00212 * 3 2 1 5 5 H 1.48501 * 109.47100 * 329.99861 * 3 2 1 6 6 H 1.48503 * 109.46624 * 209.99888 * 3 2 1 7 7 C 1.37873 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99959 * 6.64022 * 7 2 1 9 9 C 1.50697 * 120.00332 * 186.64098 * 7 2 1 10 10 H 1.08993 * 109.47174 * 305.17058 * 9 7 2 11 11 N 1.46900 * 109.47319 * 65.16975 * 9 7 2 12 12 C 1.50697 * 109.47389 * 185.16728 * 9 7 2 13 13 C 1.34334 * 126.44489 * 99.71185 * 12 9 7 14 14 N 1.34473 * 107.67124 * 179.88068 * 13 12 9 15 15 C 1.30252 * 108.70115 * 0.39219 * 14 13 12 16 16 O 1.33968 * 108.76108 * 359.76081 * 15 14 13 17 17 H 0.97006 * 119.99537 * 174.93542 * 1 2 3 18 18 H 1.00902 * 111.00097 * 293.97102 * 11 9 7 19 19 H 1.00906 * 111.00181 * 57.91993 * 11 9 7 20 20 H 1.08001 * 126.15933 * 359.97438 * 13 12 9 21 21 H 1.08004 * 125.62401 * 179.77897 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4464 2.6527 -0.7001 6 1 3.5466 1.4402 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4700 -2.1263 -0.1072 9 6 3.5040 -1.1982 0.1515 10 1 3.9478 -0.5601 -0.6126 11 7 3.8636 -0.6911 1.4824 12 6 4.0208 -2.6050 -0.0065 13 6 4.5707 -3.1336 -1.1123 14 7 4.8991 -4.4079 -0.8356 15 6 4.5595 -4.6691 0.3944 16 8 4.0128 -3.5710 0.9329 17 1 -0.4850 -0.8369 -0.0742 18 1 3.6153 0.2822 1.5778 19 1 3.4360 -1.2461 2.2086 20 1 4.7231 -2.6260 -2.0533 21 1 4.6962 -5.6150 0.8975 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259908406.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:50 Heat of formation + Delta-G solvation = -9.479940 kcal Electronic energy + Delta-G solvation = -9405.268860 eV Core-core repulsion = 7474.636094 eV Total energy + Delta-G solvation = -1930.632766 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.13626 -37.08578 -35.55718 -34.03802 -30.86532 -27.83474 -24.57410 -23.46575 -21.72777 -19.99499 -18.51528 -17.38697 -17.13718 -15.77973 -15.50960 -14.99694 -14.65208 -14.43725 -13.71793 -13.33040 -12.46978 -12.26672 -11.82003 -11.57707 -11.41932 -10.85192 -9.91997 -9.61032 -8.78838 -6.65885 0.70828 1.40775 1.50929 1.65380 1.81950 2.02827 2.36336 2.91370 3.48374 3.82257 4.19285 4.31299 4.60335 4.96162 5.13884 5.48180 5.52223 5.79357 6.18212 6.29536 6.58336 6.81037 7.18652 8.45064 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.078126 B = 0.015723 C = 0.014996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.310558 B = 1780.430400 C = 1866.760405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.014 4.014 3 Si 1.085 2.915 4 H -0.249 1.249 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.632 4.632 8 H 0.011 0.989 9 C 0.256 3.744 10 H 0.083 0.917 11 N -0.839 5.839 12 C 0.004 3.996 13 C -0.082 4.082 14 N -0.512 5.512 15 C 0.152 3.848 16 O -0.214 6.214 17 H 0.253 0.747 18 H 0.332 0.668 19 H 0.337 0.663 20 H 0.190 0.810 21 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 -2.336 1.833 9.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.904 3.096 4 H -0.173 1.173 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.671 4.671 8 H 0.030 0.970 9 C 0.145 3.855 10 H 0.100 0.900 11 N -0.370 5.370 12 C -0.050 4.050 13 C -0.219 4.219 14 N -0.241 5.241 15 C -0.074 4.074 16 O -0.100 6.100 17 H 0.063 0.937 18 H 0.147 0.853 19 H 0.149 0.851 20 H 0.207 0.793 21 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges 9.584 -1.319 1.322 9.764 hybrid contribution -1.870 -1.525 0.266 2.428 sum 7.714 -2.844 1.588 8.373 Atomic orbital electron populations 1.70937 1.08057 1.29981 1.47146 1.27443 0.96254 1.06382 0.91318 0.83526 0.75296 0.71053 0.79735 1.17333 1.21147 1.16824 1.22751 0.93248 0.94122 1.57004 0.97017 1.18000 0.92091 0.84353 0.91069 0.89992 1.59558 1.65732 1.07113 1.04580 1.23892 1.00585 0.92377 0.88118 1.23118 1.06292 0.91801 1.00731 1.70313 1.22355 1.15522 1.15882 1.29055 0.95771 0.92800 0.89783 1.84410 1.62909 1.20851 1.41875 0.93742 0.85283 0.85124 0.79265 0.69080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 13.70 21.45 0.29 -55.84 14 2 C -0.01 -0.79 5.46 84.65 0.46 -0.33 14 3 Si 1.08 45.52 25.54 68.60 1.75 47.27 14 4 H -0.25 -9.29 6.93 99.48 0.69 -8.60 14 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 14 6 H -0.24 -9.09 6.37 99.48 0.63 -8.46 14 7 C -0.63 -34.96 9.07 25.60 0.23 -34.72 14 8 H 0.01 0.73 7.98 -2.91 -0.02 0.70 14 9 C 0.26 11.76 2.70 43.42 0.12 11.88 14 10 H 0.08 3.63 6.62 -2.39 -0.02 3.61 14 11 N -0.84 -34.77 9.19 -174.97 -1.61 -36.38 14 12 C 0.00 0.19 6.14 24.79 0.15 0.35 14 13 C -0.08 -3.31 11.80 83.40 0.98 -2.33 14 14 N -0.51 -19.08 11.29 -316.06 -3.57 -22.65 14 15 C 0.15 4.85 13.23 130.48 1.73 6.58 14 16 O -0.21 -8.59 10.76 -3.74 -0.04 -8.63 14 17 H 0.25 15.79 8.72 -92.70 -0.81 14.98 14 18 H 0.33 13.08 5.47 -89.69 -0.49 12.58 14 19 H 0.34 14.03 8.96 -89.69 -0.80 13.22 14 20 H 0.19 6.75 8.06 -2.91 -0.02 6.73 14 21 H 0.29 5.30 8.06 -2.91 -0.02 5.28 14 Total: -1.00 -66.54 193.14 0.34 -66.20 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.16 Total: 28.60 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 3.67 Total: -18.57 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.88 Total: -114.87 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.04 Total: -8.63 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.75 Total: 47.27 kcal Total: -66.54 0.34 -66.20 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908406.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.715 kcal (2) G-P(sol) polarization free energy of solvation -66.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds