Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.32861 * 126.04558 * 95.00138 * 10 9 7 12 12 N 1.38692 * 107.91528 * 179.97438 * 11 10 9 13 13 H 0.97002 * 125.98361 * 179.97438 * 12 11 10 14 14 C 1.34751 * 108.03374 * 359.97438 * 12 11 10 15 15 O 1.21796 * 125.94841 * 180.02562 * 14 12 11 16 16 N 1.34757 * 108.10707 * 359.73443 * 14 12 11 17 17 H 0.97002 * 125.99017 * 180.27410 * 16 14 12 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.07999 * 126.03768 * 0.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6670 -4.3045 1.0569 12 7 3.5517 -5.2803 0.6226 13 1 4.0248 -5.9123 1.1863 14 6 3.6389 -5.1969 -0.7195 15 8 4.3255 -5.9024 -1.4366 16 7 2.8293 -4.2012 -1.1307 17 1 2.6916 -3.9210 -2.0491 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.3826 -4.1150 2.0814 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260067553.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = -5.715876 kcal Electronic energy + Delta-G solvation = -9142.973479 eV Core-core repulsion = 7212.503935 eV Total energy + Delta-G solvation = -1930.469544 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.50564 -36.33298 -33.59279 -32.63884 -30.02509 -26.44693 -23.17643 -21.82368 -20.08888 -17.39061 -16.45417 -15.71139 -15.28893 -14.62920 -14.31269 -13.41509 -12.53211 -12.29447 -11.48183 -11.16113 -10.79813 -10.73980 -10.18228 -10.08777 -9.72498 -9.42062 -8.54632 -7.05299 -6.15249 -4.21244 3.04385 3.24840 3.30951 3.32128 3.36566 3.48590 4.33607 4.40694 5.19384 5.89267 6.21775 6.25503 6.48866 7.23069 7.30670 7.34008 7.77242 7.79134 8.01536 8.15846 8.83281 8.94201 9.44273 10.93158 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.085181 B = 0.011902 C = 0.011454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.632557 B = 2352.005242 C = 2444.013700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.077 3.923 10 C 0.082 3.918 11 C -0.066 4.066 12 N -0.641 5.641 13 H 0.423 0.577 14 C 0.643 3.357 15 O -0.602 6.602 16 N -0.632 5.632 17 H 0.429 0.571 18 H 0.264 0.736 19 H 0.048 0.952 20 H 0.034 0.966 21 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -4.451 2.399 5.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.039 3.961 10 C -0.025 4.025 11 C -0.187 4.187 12 N -0.284 5.284 13 H 0.262 0.738 14 C 0.343 3.657 15 O -0.484 6.484 16 N -0.274 5.274 17 H 0.269 0.731 18 H 0.074 0.926 19 H 0.066 0.934 20 H 0.052 0.948 21 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.677 -4.762 1.965 5.806 hybrid contribution 0.563 0.888 -0.057 1.053 sum 3.241 -3.875 1.909 5.400 Atomic orbital electron populations 1.69940 1.06030 1.27128 1.49935 1.24991 0.94891 0.99359 0.94880 0.86495 0.79816 0.82931 0.78226 1.20597 1.21093 1.19774 1.21056 0.93201 0.89778 1.51843 0.92296 1.17971 0.91304 0.87488 0.99339 1.21354 0.99556 0.97774 0.83777 1.21374 1.01616 0.96217 0.99533 1.43032 1.43690 1.34330 1.07388 0.73807 1.16287 0.83348 0.83326 0.82711 1.91014 1.48174 1.50496 1.58738 1.43342 1.41601 1.32043 1.10369 0.73141 0.92637 0.93411 0.94817 0.80735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.78 13.29 55.43 0.74 -24.04 14 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 14 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 14 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 14 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 14 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 14 7 C -0.52 -13.55 9.09 -34.44 -0.31 -13.86 14 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 14 9 C 0.08 1.79 5.51 -29.03 -0.16 1.63 14 10 C 0.08 1.63 6.37 -81.33 -0.52 1.11 14 11 C -0.07 -1.14 11.84 -16.30 -0.19 -1.33 14 12 N -0.64 -10.55 6.15 -16.35 -0.10 -10.66 14 13 H 0.42 5.49 8.96 -40.82 -0.37 5.12 14 14 C 0.64 12.74 9.32 -86.96 -0.81 11.93 14 15 O -0.60 -13.59 18.06 5.10 0.09 -13.50 14 16 N -0.63 -12.12 6.15 -12.60 -0.08 -12.20 14 17 H 0.43 7.53 8.96 -40.82 -0.37 7.16 14 18 H 0.26 6.96 8.31 -40.82 -0.34 6.62 14 19 H 0.05 1.13 8.14 -51.93 -0.42 0.71 14 20 H 0.03 0.82 8.14 -51.93 -0.42 0.40 14 21 H 0.18 2.53 8.06 -52.49 -0.42 2.10 14 LS Contribution 200.42 15.07 3.02 3.02 Total: -1.00 -30.46 200.42 -4.98 -35.44 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -1.54 Total: 5.39 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.09 Total: 1.00 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.56 Total: -46.90 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -30.46 -4.98 -35.44 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067553.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.724 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds