Wall clock time and date at job start Mon Mar 30 2020 01:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47029 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47329 * 240.00035 * 3 2 1 6 6 H 1.48501 * 109.47245 * 119.99872 * 3 2 1 7 7 C 1.40315 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.40077 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35033 * 119.99821 * 175.06087 * 9 7 2 11 11 C 1.50694 * 119.99938 * 6.10146 * 10 9 7 12 12 H 1.09003 * 109.90873 * 4.59957 * 11 10 9 13 13 C 1.53994 * 109.91984 * 125.70090 * 11 10 9 14 14 C 1.54605 * 105.13809 * 120.57906 * 13 11 10 15 15 C 1.54932 * 102.92138 * 21.95410 * 14 13 11 16 16 N 1.47903 * 109.91881 * 243.49575 * 11 10 9 17 17 H 0.96997 * 120.00010 * 180.02562 * 1 2 3 18 18 H 1.07997 * 119.99883 * 355.06174 * 9 7 2 19 19 H 1.07995 * 119.99943 * 186.09733 * 10 9 7 20 20 H 1.09003 * 110.31070 * 239.49168 * 13 11 10 21 21 H 1.08992 * 110.30944 * 1.56568 * 13 11 10 22 22 H 1.08991 * 110.72470 * 140.32018 * 14 13 11 23 23 H 1.09004 * 110.71620 * 263.59906 * 14 13 11 24 24 H 1.09002 * 110.66602 * 81.02940 * 15 14 13 25 25 H 1.09000 * 110.66867 * 204.15096 * 15 14 13 26 26 H 1.00897 * 110.99913 * 335.83672 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2759 2.7464 0.0006 5 1 3.0947 1.6964 -1.2125 6 1 3.0947 1.6964 1.2125 7 6 2.0085 -1.2151 -0.0005 8 1 3.0884 -1.2151 -0.0001 9 6 1.3081 -2.4282 -0.0005 10 6 1.9794 -3.5954 -0.1018 11 6 3.4861 -3.6027 -0.0762 12 1 3.8591 -2.5956 0.1103 13 6 3.9877 -4.5593 1.0214 14 6 4.8467 -5.6095 0.2801 15 6 5.2346 -4.8778 -1.0294 16 7 4.0096 -4.1030 -1.3658 17 1 -0.4850 -0.8400 0.0004 18 1 0.2311 -2.4299 0.0804 19 1 1.4366 -4.5238 -0.2010 20 1 4.5949 -4.0178 1.7468 21 1 3.1450 -5.0402 1.5181 22 1 5.7351 -5.8598 0.8598 23 1 4.2614 -6.5032 0.0638 24 1 6.0767 -4.2068 -0.8602 25 1 5.4652 -5.5951 -1.8170 26 1 3.3297 -4.6862 -1.8302 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260076235.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:44 Heat of formation + Delta-G solvation = -24.025850 kcal Electronic energy + Delta-G solvation = -9323.717225 eV Core-core repulsion = 7593.712707 eV Total energy + Delta-G solvation = -1730.004518 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.45485 -36.54331 -33.18379 -30.67907 -29.02162 -26.45027 -22.72682 -22.01337 -21.01997 -18.44202 -16.96242 -16.36840 -15.73538 -15.63145 -14.74454 -14.48079 -13.54395 -13.04383 -12.99953 -12.75031 -12.30009 -12.01898 -11.88690 -11.62050 -11.46717 -11.35789 -10.76107 -9.95034 -9.31086 -9.19107 -6.41840 1.32405 1.50573 1.80097 1.95840 2.35282 3.23251 3.71690 3.96123 4.03907 4.28014 4.41978 4.68678 4.72169 4.92996 4.99061 5.01803 5.14897 5.20916 5.50820 5.60356 5.72447 6.10578 6.19348 6.43618 6.65621 6.93625 7.09912 8.11080 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.071673 B = 0.012330 C = 0.011421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.567760 B = 2270.282644 C = 2450.942776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C -0.013 4.013 3 Si 1.124 2.876 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.006 3.994 10 C -0.415 4.415 11 C 0.143 3.857 12 H 0.055 0.945 13 C -0.143 4.143 14 C -0.145 4.145 15 C 0.037 3.963 16 N -0.686 5.686 17 H 0.273 0.727 18 H 0.049 0.951 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.053 0.947 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.281 -4.569 0.332 9.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.224 4.224 3 Si 0.941 3.059 4 H -0.194 1.194 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.570 4.570 8 H 0.092 0.908 9 C -0.016 4.016 10 C -0.437 4.437 11 C 0.034 3.966 12 H 0.073 0.927 13 C -0.182 4.182 14 C -0.184 4.184 15 C -0.093 4.093 16 N -0.313 5.313 17 H 0.085 0.915 18 H 0.067 0.933 19 H 0.083 0.917 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.106 0.894 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.349 -2.300 0.093 8.660 hybrid contribution -0.912 -2.740 0.514 2.933 sum 7.436 -5.040 0.607 9.004 Atomic orbital electron populations 1.70621 1.08765 1.32011 1.36480 1.28746 0.96054 1.08202 0.89408 0.82901 0.74501 0.69422 0.79075 1.19450 1.18712 1.18329 1.20770 0.96579 0.92900 1.46716 0.90832 1.19965 0.94926 0.94611 0.92066 1.22107 0.94120 0.94644 1.32861 1.20711 0.91912 0.96897 0.87040 0.92721 1.22850 0.98927 0.97630 0.98809 1.23039 0.99901 0.97635 0.97811 1.23256 0.93958 0.95808 0.96229 1.63090 1.07916 1.38286 1.21983 0.91501 0.93269 0.91663 0.92162 0.92855 0.89365 0.91563 0.90752 0.89282 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.48 13.59 21.89 0.30 -48.19 15 2 C -0.01 -0.69 5.50 85.37 0.47 -0.22 15 3 Si 1.12 45.73 29.94 68.60 2.05 47.78 15 4 H -0.27 -10.64 7.11 99.48 0.71 -9.94 15 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 6 H -0.26 -9.71 7.11 99.48 0.71 -9.01 15 7 C -0.54 -30.71 8.65 23.22 0.20 -30.51 15 8 H 0.07 4.16 5.50 -2.91 -0.02 4.14 15 9 C 0.01 0.32 9.32 21.98 0.20 0.53 15 10 C -0.41 -21.26 8.67 24.95 0.22 -21.04 15 11 C 0.14 6.46 3.55 44.31 0.16 6.62 15 12 H 0.05 2.79 5.39 -2.39 -0.01 2.77 15 13 C -0.14 -5.30 6.56 31.48 0.21 -5.09 15 14 C -0.14 -4.17 7.07 31.80 0.22 -3.95 15 15 C 0.04 1.11 7.55 86.60 0.65 1.77 15 16 N -0.69 -27.38 7.42 -483.38 -3.58 -30.97 15 17 H 0.27 15.78 6.54 -92.71 -0.61 15.17 15 18 H 0.05 2.84 6.25 -2.91 -0.02 2.82 15 19 H 0.07 3.24 8.06 -2.91 -0.02 3.22 15 20 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 21 H 0.05 2.04 7.68 -2.39 -0.02 2.02 15 22 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 24 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.33 12.90 8.39 -89.70 -0.75 12.14 15 Total: -1.00 -60.64 217.64 1.68 -58.97 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.58 Total: 24.31 kcal Atomic # 6 Polarization: -54.24 SS G_CDS: 2.33 Total: -51.90 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -3.29 Total: -79.15 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.05 Total: 47.78 kcal Total: -60.64 1.68 -58.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260076235.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.942 kcal (2) G-P(sol) polarization free energy of solvation -60.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds