Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48500 * 109.47370 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47059 * 119.99996 * 3 2 1 6 6 H 1.48502 * 109.47102 * 239.99805 * 3 2 1 7 7 C 1.40310 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99724 * 180.02562 * 7 2 1 9 9 C 1.40073 * 119.99719 * 359.97438 * 7 2 1 10 10 C 1.35033 * 119.99693 * 175.70886 * 9 7 2 11 11 C 1.50693 * 119.99956 * 2.70738 * 10 9 7 12 12 H 1.08999 * 109.88375 * 353.24305 * 11 10 9 13 13 C 1.54326 * 109.89179 * 232.20330 * 11 10 9 14 14 C 1.55392 * 102.90255 * 218.40932 * 13 11 10 15 15 C 1.54912 * 101.74125 * 35.48409 * 14 13 11 16 16 N 1.47446 * 109.88871 * 114.27144 * 11 10 9 17 17 H 0.96996 * 119.99982 * 179.97438 * 1 2 3 18 18 H 1.07999 * 119.99907 * 355.71120 * 9 7 2 19 19 H 1.08002 * 119.99457 * 182.71158 * 10 9 7 20 20 H 1.09007 * 110.70096 * 336.70155 * 13 11 10 21 21 H 1.08998 * 110.70038 * 99.92762 * 13 11 10 22 22 H 1.08998 * 110.87429 * 277.39240 * 14 13 11 23 23 H 1.08999 * 111.05626 * 153.65118 * 14 13 11 24 24 H 1.09001 * 110.37209 * 204.18861 * 15 14 13 25 25 H 1.08996 * 110.46724 * 81.89155 * 15 14 13 26 26 H 1.00899 * 111.00352 * 240.68229 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 1.2759 2.7465 0.0006 5 1 3.0946 1.6965 1.2125 6 1 3.0947 1.6964 -1.2125 7 6 2.0085 -1.2151 -0.0005 8 1 3.0884 -1.2150 -0.0001 9 6 1.3081 -2.4282 -0.0005 10 6 1.9805 -3.5959 -0.0886 11 6 3.4870 -3.5970 -0.1253 12 1 3.8569 -2.5739 -0.1923 13 6 3.9821 -4.4149 -1.3367 14 6 5.2298 -5.1496 -0.7728 15 6 4.7946 -5.4355 0.6862 16 7 4.0178 -4.2437 1.0888 17 1 -0.4850 -0.8400 -0.0004 18 1 0.2305 -2.4295 0.0698 19 1 1.4385 -4.5290 -0.1327 20 1 3.2241 -5.1312 -1.6538 21 1 4.2590 -3.7557 -2.1594 22 1 6.1065 -4.5025 -0.7991 23 1 5.4156 -6.0775 -1.3137 24 1 5.6687 -5.5529 1.3268 25 1 4.1703 -6.3279 0.7299 26 1 4.5882 -3.6028 1.6200 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260076238.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = -22.349871 kcal Electronic energy + Delta-G solvation = -9319.969942 eV Core-core repulsion = 7590.038100 eV Total energy + Delta-G solvation = -1729.931842 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.39125 -36.50903 -33.15929 -30.81758 -29.01892 -26.49584 -22.78402 -21.85201 -20.90189 -17.99591 -17.82788 -16.25108 -15.81987 -15.69584 -14.59368 -14.27303 -13.43112 -13.09044 -12.93006 -12.87828 -12.28526 -12.00185 -11.93673 -11.65142 -11.53900 -11.28339 -10.86411 -9.80904 -9.18230 -9.13971 -6.36986 1.35920 1.50714 1.79688 1.98672 2.37251 3.24829 3.71417 3.91241 3.99845 4.24645 4.43254 4.68623 4.76268 4.84102 4.97092 5.00455 5.13079 5.29005 5.49467 5.68445 5.72608 6.12038 6.27505 6.46518 6.72753 6.97561 7.14052 8.15343 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.071721 B = 0.012275 C = 0.011455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.305719 B = 2280.536161 C = 2443.688804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C -0.015 4.015 3 Si 1.126 2.874 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.375 4.375 11 C 0.145 3.855 12 H 0.046 0.954 13 C -0.131 4.131 14 C -0.143 4.143 15 C 0.047 3.953 16 N -0.699 5.699 17 H 0.271 0.729 18 H 0.045 0.955 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 -3.333 -0.911 10.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.226 4.226 3 Si 0.942 3.058 4 H -0.197 1.197 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.576 4.576 8 H 0.093 0.907 9 C -0.028 4.028 10 C -0.398 4.398 11 C 0.037 3.963 12 H 0.064 0.936 13 C -0.170 4.170 14 C -0.182 4.182 15 C -0.082 4.082 16 N -0.327 5.327 17 H 0.083 0.917 18 H 0.063 0.937 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.186 -2.056 -0.733 9.442 hybrid contribution 0.131 -1.584 -0.313 1.620 sum 9.317 -3.640 -1.047 10.058 Atomic orbital electron populations 1.70615 1.08859 1.31881 1.37215 1.28750 0.96073 1.08216 0.89538 0.82888 0.74466 0.69343 0.79065 1.19746 1.18448 1.18349 1.20678 0.96395 0.92754 1.47736 0.90724 1.19941 0.94835 0.94730 0.93321 1.21968 0.94348 0.93746 1.29754 1.20582 0.92696 0.95437 0.87634 0.93627 1.22820 0.97423 0.98866 0.97867 1.23152 0.96915 1.01026 0.97124 1.22899 0.96336 0.93944 0.95012 1.61667 1.38718 1.09845 1.22505 0.91684 0.93710 0.92780 0.92674 0.91756 0.90757 0.89311 0.89695 0.91936 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.40 13.59 21.89 0.30 -49.10 15 2 C -0.02 -0.83 5.50 85.37 0.47 -0.36 15 3 Si 1.13 45.15 29.94 68.60 2.05 47.21 15 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 15 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 7 C -0.55 -30.84 8.65 23.22 0.20 -30.64 15 8 H 0.07 4.08 5.46 -2.91 -0.02 4.06 15 9 C -0.01 -0.41 9.33 21.98 0.20 -0.21 15 10 C -0.38 -19.94 9.15 24.95 0.23 -19.71 15 11 C 0.14 6.47 3.51 44.51 0.16 6.62 15 12 H 0.05 2.19 5.34 -2.39 -0.01 2.18 15 13 C -0.13 -4.84 6.48 31.87 0.21 -4.63 15 14 C -0.14 -4.03 7.08 32.07 0.23 -3.81 15 15 C 0.05 1.42 7.58 86.77 0.66 2.08 15 16 N -0.70 -27.48 7.00 -486.18 -3.40 -30.89 15 17 H 0.27 15.98 6.54 -92.71 -0.61 15.37 15 18 H 0.04 2.66 6.24 -2.91 -0.02 2.65 15 19 H 0.05 2.89 8.06 -2.91 -0.02 2.87 15 20 H 0.05 2.11 7.84 -2.38 -0.02 2.09 15 21 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.08 2.05 8.14 -2.39 -0.02 2.03 15 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.33 12.02 8.91 -89.69 -0.80 11.22 15 Total: -1.00 -62.48 218.25 1.83 -60.65 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.53 Total: 22.77 kcal Atomic # 6 Polarization: -52.99 SS G_CDS: 2.35 Total: -50.64 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -3.11 Total: -79.98 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.05 Total: 47.21 kcal Total: -62.48 1.83 -60.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260076238.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.304 kcal (2) G-P(sol) polarization free energy of solvation -62.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds