Wall clock time and date at job start Mon Mar 30 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35034 * 1 3 3 C 1.40080 * 119.99982 * 2 1 4 4 H 1.07997 * 119.99698 * 204.83365 * 3 2 1 5 5 C 1.40308 * 119.99919 * 25.10140 * 3 2 1 6 6 N 1.30686 * 119.99715 * 14.24854 * 5 3 2 7 7 Si 1.86793 * 119.99905 * 194.24719 * 5 3 2 8 8 H 1.48501 * 109.47152 * 60.00272 * 7 5 3 9 9 H 1.48501 * 109.47066 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47513 * 300.00221 * 7 5 3 11 11 C 1.50701 * 120.00356 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.87331 * 5.70435 * 11 2 1 13 13 C 1.54307 * 109.89086 * 244.67330 * 11 2 1 14 14 C 1.55400 * 102.90144 * 218.40573 * 13 11 2 15 15 C 1.54906 * 101.73785 * 35.48035 * 14 13 11 16 16 N 1.47450 * 109.88768 * 126.73265 * 11 2 1 17 17 H 1.07994 * 119.99799 * 185.90867 * 1 2 3 18 18 H 1.07995 * 119.99835 * 5.91157 * 1 2 3 19 19 H 0.97003 * 119.99833 * 180.02562 * 6 5 3 20 20 H 1.09000 * 110.71039 * 336.69122 * 13 11 2 21 21 H 1.09001 * 110.71078 * 99.92913 * 13 11 2 22 22 H 1.09002 * 110.87384 * 277.39385 * 14 13 11 23 23 H 1.08999 * 111.02681 * 153.63497 * 14 13 11 24 24 H 1.09007 * 110.37072 * 204.18680 * 15 14 13 25 25 H 1.09002 * 110.37454 * 81.85372 * 15 14 13 26 26 H 1.00893 * 111.00062 * 356.15217 * 16 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0558 1.2563 -0.3928 5 6 1.4486 2.3708 0.5155 6 7 0.3653 2.2765 1.2405 7 14 2.1952 4.0469 0.1655 8 1 2.2235 4.2798 -1.3009 9 1 1.3758 5.0998 0.8176 10 1 3.5795 4.0938 0.7009 11 6 2.1039 -1.3051 0.0006 12 1 1.4059 -2.1361 -0.1009 13 6 2.9040 -1.4487 1.3122 14 6 4.2290 -2.1091 0.8398 15 6 4.4338 -1.4483 -0.5462 16 7 3.0729 -1.3252 -1.1106 17 1 -0.5399 -0.9303 0.0963 18 1 -0.5399 0.9303 -0.0963 19 1 -0.0512 3.0769 1.5965 20 1 3.0974 -0.4716 1.7548 21 1 2.3782 -2.0943 2.0157 22 1 4.1125 -3.1886 0.7444 23 1 5.0499 -1.8646 1.5140 24 1 5.0521 -2.0828 -1.1814 25 1 4.8885 -0.4641 -0.4340 26 1 2.9903 -0.4947 -1.6775 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103383.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:57 Heat of formation + Delta-G solvation = -11.096090 kcal Electronic energy + Delta-G solvation = -9641.467525 eV Core-core repulsion = 7912.023683 eV Total energy + Delta-G solvation = -1729.443842 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.62892 -36.10394 -32.83051 -30.86407 -28.59426 -27.14429 -22.42006 -21.79207 -21.02406 -17.85573 -17.33080 -16.46537 -16.19566 -14.81479 -14.41314 -14.03580 -13.64789 -13.30947 -12.95822 -12.73226 -12.55097 -12.25764 -11.96924 -11.73457 -11.45383 -11.29553 -10.92461 -9.67490 -8.99889 -8.45386 -6.24934 1.30741 1.37651 1.47233 2.04460 2.26446 3.20631 3.76906 3.94433 4.02606 4.28163 4.53303 4.74701 4.82599 5.02475 5.04359 5.18655 5.20441 5.25572 5.44279 5.53255 6.01820 6.15611 6.29633 6.55660 6.90707 7.12200 7.38263 8.53464 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.056083 B = 0.017243 C = 0.015131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.143947 B = 1623.429273 C = 1850.089136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.367 4.367 2 C 0.012 3.988 3 C -0.492 4.492 4 H 0.064 0.936 5 C 0.027 3.973 6 N -0.835 5.835 7 Si 0.971 3.029 8 H -0.263 1.263 9 H -0.275 1.275 10 H -0.261 1.261 11 C 0.112 3.888 12 H 0.054 0.946 13 C -0.127 4.127 14 C -0.117 4.117 15 C 0.043 3.957 16 N -0.681 5.681 17 H 0.042 0.958 18 H 0.067 0.933 19 H 0.276 0.724 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.034 0.966 26 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.636 -2.440 -0.522 8.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.409 4.409 2 C 0.010 3.990 3 C -0.523 4.523 4 H 0.082 0.918 5 C -0.185 4.185 6 N -0.463 5.463 7 Si 0.793 3.207 8 H -0.188 1.188 9 H -0.200 1.200 10 H -0.185 1.185 11 C 0.002 3.998 12 H 0.072 0.928 13 C -0.165 4.165 14 C -0.155 4.155 15 C -0.086 4.086 16 N -0.310 5.310 17 H 0.061 0.939 18 H 0.086 0.914 19 H 0.087 0.913 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.052 0.948 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.418 -3.025 -0.546 8.030 hybrid contribution -0.207 1.755 0.426 1.818 sum 7.211 -1.270 -0.119 7.323 Atomic orbital electron populations 1.23272 0.95501 0.96684 1.25453 1.19150 0.93387 0.92909 0.93590 1.19185 1.00826 0.93972 1.38337 0.91817 1.26658 0.95033 1.04361 0.92472 1.69940 1.19280 1.31407 1.25668 0.85440 0.78989 0.76900 0.79411 1.18801 1.19999 1.18492 1.21241 0.93431 0.94785 0.90317 0.92787 1.22755 0.96692 1.00299 0.96789 1.22726 0.96496 1.00258 0.96019 1.22907 0.90703 0.99238 0.95752 1.62181 1.03801 1.44614 1.20371 0.93903 0.91430 0.91340 0.92902 0.91503 0.90003 0.89500 0.88961 0.94754 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.37 -21.32 12.92 67.08 0.87 -20.46 15 2 C 0.01 0.65 4.50 -20.15 -0.09 0.56 15 3 C -0.49 -26.71 7.81 23.22 0.18 -26.53 15 4 H 0.06 3.29 7.38 -2.91 -0.02 3.27 15 5 C 0.03 1.44 5.16 85.37 0.44 1.88 15 6 N -0.84 -47.34 10.87 21.89 0.24 -47.10 15 7 Si 0.97 40.64 29.59 68.60 2.03 42.67 15 8 H -0.26 -10.78 7.11 99.48 0.71 -10.08 15 9 H -0.28 -11.13 7.11 99.48 0.71 -10.43 15 10 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 11 C 0.11 5.08 3.68 44.51 0.16 5.24 15 12 H 0.05 2.51 7.88 -2.39 -0.02 2.49 15 13 C -0.13 -5.07 6.42 31.86 0.20 -4.86 15 14 C -0.12 -3.62 7.08 32.07 0.23 -3.39 15 15 C 0.04 1.41 7.58 86.77 0.66 2.07 15 16 N -0.68 -27.43 7.25 -486.20 -3.52 -30.95 15 17 H 0.04 2.37 7.94 -2.91 -0.02 2.34 15 18 H 0.07 4.21 6.16 -2.91 -0.02 4.19 15 19 H 0.28 14.43 8.29 -92.71 -0.77 13.66 15 20 H 0.05 2.38 7.34 -2.39 -0.02 2.36 15 21 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.09 2.28 8.14 -2.39 -0.02 2.27 15 24 H 0.09 2.54 8.14 -2.38 -0.02 2.52 15 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 26 H 0.34 14.35 7.36 -89.70 -0.66 13.69 15 Total: -1.00 -60.31 217.23 1.89 -58.42 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.50 Total: 22.46 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 2.65 Total: -45.49 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -3.29 Total: -78.06 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -60.31 1.89 -58.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103383.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.320 kcal (2) G-P(sol) polarization free energy of solvation -60.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds