Wall clock time and date at job start Mon Mar 30 2020 02:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99878 * 2 1 4 4 H 1.48499 * 109.47187 * 239.99662 * 3 2 1 5 5 H 1.48493 * 109.47637 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46999 * 120.00153 * 3 2 1 7 7 C 1.37873 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00228 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47512 * 179.97438 * 9 7 2 11 11 C 1.36600 * 125.90630 * 89.99549 * 10 9 7 12 12 C 1.34822 * 108.44891 * 180.02562 * 11 10 9 13 13 C 1.41472 * 108.08597 * 0.02562 * 12 11 10 14 14 O 1.21783 * 126.19613 * 179.97438 * 13 12 11 15 15 N 1.34872 * 107.61421 * 0.22551 * 13 12 11 16 16 H 0.97000 * 126.16834 * 179.75023 * 15 13 12 17 17 H 0.97004 * 119.99503 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47604 * 59.99742 * 9 7 2 19 19 H 1.08999 * 109.47126 * 300.00079 * 9 7 2 20 20 H 1.08001 * 125.77906 * 0.02888 * 11 10 9 21 21 H 1.08005 * 125.96282 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.7236 -4.2226 1.1032 12 6 3.5596 -5.1995 0.6978 13 6 3.5704 -5.2095 -0.7168 14 8 4.2149 -5.9611 -1.4258 15 7 2.7419 -4.2322 -1.1381 16 1 2.5518 -4.0011 -2.0608 17 1 -0.4849 0.8401 0.0004 18 1 0.6246 -2.5563 -0.8919 19 1 0.6240 -2.5574 0.8880 20 1 2.5028 -3.9658 2.1287 21 1 4.1231 -5.8595 1.3409 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260171121.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:37 Heat of formation + Delta-G solvation = 11.506840 kcal Electronic energy + Delta-G solvation = -9169.391971 eV Core-core repulsion = 7239.669261 eV Total energy + Delta-G solvation = -1929.722711 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.22292 -38.12514 -35.41320 -32.62186 -32.38562 -28.34160 -24.82241 -22.88934 -21.91974 -19.05182 -18.60964 -16.75351 -16.44644 -16.11749 -15.82597 -14.67324 -14.64509 -14.25988 -13.58567 -13.33452 -12.75628 -12.67509 -12.25775 -11.59187 -10.89849 -10.72743 -10.55505 -8.73049 -8.26823 -6.51186 0.88631 1.05232 1.41597 1.43806 1.51427 2.33629 2.40325 2.97789 3.20660 4.04948 4.48904 4.81636 4.95458 5.06987 5.26447 5.55585 5.63043 5.78792 6.38133 6.46738 6.69269 7.21763 7.41884 8.70852 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.085551 B = 0.012068 C = 0.011693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.212397 B = 2319.707840 C = 2394.112380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.567 4.567 8 H 0.058 0.942 9 C 0.268 3.732 10 N -0.366 5.366 11 C 0.188 3.812 12 C -0.396 4.396 13 C 0.503 3.497 14 O -0.632 6.632 15 N -0.517 5.517 16 H 0.433 0.567 17 H 0.273 0.727 18 H 0.033 0.967 19 H 0.072 0.928 20 H 0.225 0.775 21 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -1.349 3.753 4.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.605 4.605 8 H 0.076 0.924 9 C 0.151 3.849 10 N -0.157 5.157 11 C 0.047 3.953 12 C -0.427 4.427 13 C 0.303 3.697 14 O -0.519 6.519 15 N -0.263 5.263 16 H 0.278 0.722 17 H 0.082 0.918 18 H 0.052 0.948 19 H 0.089 0.911 20 H 0.241 0.759 21 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.902 -1.398 3.242 3.644 hybrid contribution 0.168 1.049 -0.722 1.284 sum 1.070 -0.349 2.520 2.760 Atomic orbital electron populations 1.69968 1.07165 1.28934 1.49253 1.25627 0.95643 1.02417 0.93727 0.85504 0.78307 0.78348 0.78942 1.20300 1.20477 1.19119 1.21654 0.93740 0.91283 1.53798 0.92402 1.19588 0.85583 0.79892 0.99880 1.47555 1.40554 1.30629 0.97012 1.23130 0.89890 0.89282 0.92961 1.21808 1.15856 1.11288 0.93729 1.17544 0.80134 0.80400 0.91609 1.90757 1.49699 1.46290 1.65185 1.46168 1.44227 1.32662 1.03262 0.72185 0.91795 0.94847 0.91067 0.75854 0.81070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.91 13.29 21.45 0.28 -46.63 14 2 C 0.03 1.36 5.46 84.65 0.46 1.82 14 3 Si 0.96 39.42 29.54 68.60 2.03 41.44 14 4 H -0.28 -11.42 7.11 99.48 0.71 -10.71 14 5 H -0.28 -11.18 7.11 99.48 0.71 -10.47 14 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 14 7 C -0.57 -27.33 9.39 25.60 0.24 -27.09 14 8 H 0.06 2.87 7.81 -2.91 -0.02 2.84 14 9 C 0.27 11.45 6.20 85.63 0.53 11.98 14 10 N -0.37 -13.90 3.64 -350.82 -1.28 -15.18 14 11 C 0.19 5.92 11.49 83.17 0.96 6.87 14 12 C -0.40 -13.70 10.83 22.28 0.24 -13.46 14 13 C 0.50 21.24 8.35 85.02 0.71 21.95 14 14 O -0.63 -31.13 18.06 -4.61 -0.08 -31.22 14 15 N -0.52 -20.24 7.24 -180.02 -1.30 -21.55 14 16 H 0.43 15.58 8.96 -213.31 -1.91 13.67 14 17 H 0.27 13.31 8.31 -92.71 -0.77 12.54 14 18 H 0.03 1.52 8.14 -2.39 -0.02 1.50 14 19 H 0.07 2.97 8.14 -2.39 -0.02 2.95 14 20 H 0.23 4.86 8.06 -2.91 -0.02 4.83 14 21 H 0.17 5.06 8.06 -2.91 -0.02 5.04 14 Total: -1.00 -60.83 202.29 2.12 -58.72 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -0.67 Total: 12.33 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 3.14 Total: 2.08 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.30 Total: -83.35 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.08 Total: -31.22 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.44 kcal Total: -60.83 2.12 -58.72 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171121.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.225 kcal (2) G-P(sol) polarization free energy of solvation -60.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds