Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48494 * 109.47113 * 89.99498 * 3 2 1 5 5 H 1.48501 * 109.47045 * 209.99822 * 3 2 1 6 6 H 1.48500 * 109.46767 * 329.99635 * 3 2 1 7 7 C 1.40313 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99688 * 180.02562 * 7 2 1 9 9 C 1.40069 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.35037 * 119.99902 * 172.40199 * 9 7 2 11 11 C 1.51431 * 121.11098 * 353.73301 * 10 9 7 12 12 C 1.52886 * 108.46130 * 228.98740 * 11 10 9 13 13 N 1.46829 * 109.48004 * 306.45170 * 12 11 10 14 14 C 1.46825 * 111.56782 * 65.25791 * 13 12 11 15 15 C 1.51436 * 121.11132 * 174.01859 * 10 9 7 16 16 H 0.97003 * 120.00097 * 0.02562 * 1 2 3 17 17 H 1.08001 * 120.00231 * 352.39594 * 9 7 2 18 18 H 1.08997 * 109.71188 * 348.74018 * 11 10 9 19 19 H 1.09002 * 109.70959 * 109.36715 * 11 10 9 20 20 H 1.08996 * 109.54781 * 186.38317 * 12 11 10 21 21 H 1.09001 * 109.34204 * 66.39984 * 12 11 10 22 22 H 1.00906 * 110.99354 * 189.61545 * 13 12 11 23 23 H 1.08995 * 109.48838 * 174.62961 * 14 13 12 24 24 H 1.09000 * 109.49359 * 54.58940 * 14 13 12 25 25 H 1.09002 * 109.70633 * 250.63538 * 15 10 9 26 26 H 1.09002 * 109.70997 * 11.21419 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4883 2.0464 1.4000 5 1 3.5385 1.4401 -0.7000 6 1 1.4384 2.6526 -0.7001 7 6 2.0084 -1.2152 0.0005 8 1 3.0884 -1.2151 0.0010 9 6 1.3081 -2.4282 0.0005 10 6 1.9744 -3.5925 -0.1536 11 6 3.4556 -3.6107 -0.4681 12 6 3.6888 -4.5563 -1.6466 13 7 3.0972 -5.8664 -1.3475 14 6 1.6354 -5.7858 -1.2360 15 6 1.2641 -4.9237 -0.0240 16 1 -0.4850 0.8401 -0.0004 17 1 0.2351 -2.4323 0.1239 18 1 3.7876 -2.6067 -0.7324 19 1 4.0114 -3.9657 0.3998 20 1 4.7594 -4.6709 -1.8159 21 1 3.2217 -4.1418 -2.5399 22 1 3.3700 -6.5519 -2.0360 23 1 1.2246 -6.7874 -1.1092 24 1 1.2258 -5.3367 -2.1408 25 1 1.5810 -5.4217 0.8924 26 1 0.1860 -4.7644 -0.0017 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260280397.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = -9.474739 kcal Electronic energy + Delta-G solvation = -9385.477317 eV Core-core repulsion = 7656.103783 eV Total energy + Delta-G solvation = -1729.373535 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.25257 -34.04445 -31.64646 -30.02338 -27.49474 -23.84077 -22.09939 -20.38306 -17.52888 -16.22476 -15.78942 -14.56606 -13.79464 -13.30217 -13.06022 -12.57047 -11.90890 -11.76577 -11.27784 -11.25591 -10.92064 -10.35057 -10.16981 -9.96180 -9.40817 -9.18899 -8.75685 -7.86861 -7.32235 -6.69085 -4.14088 2.98390 3.11555 3.16588 3.91366 4.02059 4.93821 5.45980 5.86069 5.94895 6.16202 6.26585 6.48152 6.57233 6.66492 6.93602 7.01547 7.24002 7.27793 7.32379 7.50067 7.78463 7.99216 8.05189 8.53752 8.74670 9.16003 9.35512 10.34732 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.080609 B = 0.012774 C = 0.011488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.274081 B = 2191.447883 C = 2436.790367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.262 1.262 6 H -0.279 1.279 7 C -0.460 4.460 8 H 0.074 0.926 9 C 0.057 3.943 10 C -0.390 4.390 11 C -0.031 4.031 12 C 0.066 3.934 13 N -0.690 5.690 14 C 0.066 3.934 15 C -0.033 4.033 16 H 0.279 0.721 17 H 0.077 0.923 18 H 0.060 0.940 19 H 0.032 0.968 20 H 0.051 0.949 21 H 0.021 0.979 22 H 0.323 0.677 23 H 0.051 0.949 24 H 0.021 0.979 25 H 0.037 0.963 26 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -3.413 -2.385 5.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.186 1.186 6 H -0.204 1.204 7 C -0.490 4.490 8 H 0.092 0.908 9 C 0.037 3.963 10 C -0.394 4.394 11 C -0.069 4.069 12 C -0.063 4.063 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.070 4.070 16 H 0.089 0.911 17 H 0.095 0.905 18 H 0.078 0.922 19 H 0.051 0.949 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.138 0.862 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.910 -3.176 -1.712 4.635 hybrid contribution 0.012 0.910 -0.986 1.342 sum 2.923 -2.265 -2.698 4.578 Atomic orbital electron populations 1.69577 1.07685 1.29256 1.38616 1.26122 0.94767 1.01649 0.91931 0.86299 0.80402 0.80711 0.79142 1.19486 1.18626 1.20417 1.19653 0.94757 0.90691 1.43905 0.90760 1.19687 0.96080 0.91478 0.89076 1.20923 0.94480 0.92234 1.31730 1.20015 0.95919 0.96445 0.94485 1.21933 0.96522 0.89552 0.98312 1.60141 1.10351 1.08853 1.52668 1.21966 0.87239 0.98261 0.98817 1.20088 0.97158 0.94949 0.94831 0.91056 0.90473 0.92150 0.94947 0.93038 0.96081 0.86170 0.93069 0.96086 0.94416 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.39 12.88 55.57 0.72 -21.68 15 2 C 0.07 1.87 5.50 -17.26 -0.09 1.77 15 3 Si 0.91 19.58 29.56 -169.99 -5.03 14.56 15 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 5 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.46 -12.70 8.52 -38.12 -0.32 -13.02 15 8 H 0.07 2.00 5.91 -52.49 -0.31 1.69 15 9 C 0.06 1.57 9.04 -40.03 -0.36 1.21 15 10 C -0.39 -9.84 5.54 -99.77 -0.55 -10.39 15 11 C -0.03 -0.72 5.87 -27.58 -0.16 -0.88 15 12 C 0.07 1.30 6.55 -3.92 -0.03 1.28 15 13 N -0.69 -12.87 6.76 -113.79 -0.77 -13.64 15 14 C 0.07 1.28 6.56 -3.71 -0.02 1.25 15 15 C -0.03 -0.73 6.22 -27.37 -0.17 -0.90 15 16 H 0.28 6.90 8.29 -40.82 -0.34 6.56 15 17 H 0.08 2.24 7.39 -52.49 -0.39 1.85 15 18 H 0.06 1.43 5.83 -51.93 -0.30 1.13 15 19 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.02 0.43 8.10 -51.93 -0.42 0.01 15 22 H 0.32 4.98 8.90 -39.29 -0.35 4.64 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.02 0.42 8.10 -51.93 -0.42 -0.01 15 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.04 0.94 7.97 -51.93 -0.41 0.52 15 LS Contribution 217.38 15.07 3.28 3.28 Total: -1.00 -28.11 217.38 -6.95 -35.06 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.43 Total: 2.10 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.72 Total: -19.67 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.05 Total: -35.32 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.11 -6.95 -35.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280397.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.583 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds