Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48494 * 109.47113 * 89.99498 * 3 2 1 5 5 H 1.48501 * 109.47045 * 209.99822 * 3 2 1 6 6 H 1.48500 * 109.46767 * 329.99635 * 3 2 1 7 7 C 1.40313 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99688 * 180.02562 * 7 2 1 9 9 C 1.40069 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.35037 * 119.99902 * 172.40199 * 9 7 2 11 11 C 1.51431 * 121.11098 * 353.73301 * 10 9 7 12 12 C 1.52886 * 108.46130 * 228.98740 * 11 10 9 13 13 N 1.46829 * 109.48004 * 306.45170 * 12 11 10 14 14 C 1.46825 * 111.56782 * 65.25791 * 13 12 11 15 15 C 1.51436 * 121.11132 * 174.01859 * 10 9 7 16 16 H 0.97003 * 120.00097 * 0.02562 * 1 2 3 17 17 H 1.08001 * 120.00231 * 352.39594 * 9 7 2 18 18 H 1.08997 * 109.71188 * 348.74018 * 11 10 9 19 19 H 1.09002 * 109.70959 * 109.36715 * 11 10 9 20 20 H 1.08996 * 109.54781 * 186.38317 * 12 11 10 21 21 H 1.09001 * 109.34204 * 66.39984 * 12 11 10 22 22 H 1.00906 * 110.99354 * 189.61545 * 13 12 11 23 23 H 1.08995 * 109.48838 * 174.62961 * 14 13 12 24 24 H 1.09000 * 109.49359 * 54.58940 * 14 13 12 25 25 H 1.09002 * 109.70633 * 250.63538 * 15 10 9 26 26 H 1.09002 * 109.70997 * 11.21419 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4883 2.0464 1.4000 5 1 3.5385 1.4401 -0.7000 6 1 1.4384 2.6526 -0.7001 7 6 2.0084 -1.2152 0.0005 8 1 3.0884 -1.2151 0.0010 9 6 1.3081 -2.4282 0.0005 10 6 1.9744 -3.5925 -0.1536 11 6 3.4556 -3.6107 -0.4681 12 6 3.6888 -4.5563 -1.6466 13 7 3.0972 -5.8664 -1.3475 14 6 1.6354 -5.7858 -1.2360 15 6 1.2641 -4.9237 -0.0240 16 1 -0.4850 0.8401 -0.0004 17 1 0.2351 -2.4323 0.1239 18 1 3.7876 -2.6067 -0.7324 19 1 4.0114 -3.9657 0.3998 20 1 4.7594 -4.6709 -1.8159 21 1 3.2217 -4.1418 -2.5399 22 1 3.3700 -6.5519 -2.0360 23 1 1.2246 -6.7874 -1.1092 24 1 1.2258 -5.3367 -2.1408 25 1 1.5810 -5.4217 0.8924 26 1 0.1860 -4.7644 -0.0017 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260280397.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = -28.253434 kcal Electronic energy + Delta-G solvation = -9386.291623 eV Core-core repulsion = 7656.103783 eV Total energy + Delta-G solvation = -1730.187840 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.96940 -35.99380 -33.54584 -31.72457 -29.41382 -25.77584 -23.81464 -22.12756 -19.45733 -18.21436 -17.47812 -16.33866 -15.42437 -15.03860 -14.89083 -14.41572 -13.67818 -13.54660 -12.99898 -12.98556 -12.67934 -12.04369 -12.02370 -11.82895 -11.33324 -11.04250 -10.68360 -9.57465 -9.20741 -8.66182 -6.20921 1.24743 1.36416 1.50662 1.95844 2.22097 3.37596 3.47102 4.31570 4.33568 4.49532 4.63647 4.81683 4.87144 4.94813 5.09089 5.18320 5.29181 5.30789 5.48739 5.57995 5.98217 6.19694 6.42967 6.67201 6.74667 7.09996 7.27656 8.40157 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.080609 B = 0.012774 C = 0.011488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.274081 B = 2191.447883 C = 2436.790367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.023 3.977 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.267 1.267 7 C -0.491 4.491 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.384 4.384 11 C -0.035 4.035 12 C 0.072 3.928 13 N -0.690 5.690 14 C 0.072 3.928 15 C -0.039 4.039 16 H 0.288 0.712 17 H 0.050 0.950 18 H 0.047 0.953 19 H 0.033 0.967 20 H 0.083 0.917 21 H 0.013 0.987 22 H 0.348 0.652 23 H 0.085 0.915 24 H 0.014 0.986 25 H 0.041 0.959 26 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -3.862 -2.946 6.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.192 1.192 7 C -0.521 4.521 8 H 0.092 0.908 9 C 0.001 3.999 10 C -0.387 4.387 11 C -0.073 4.073 12 C -0.057 4.057 13 N -0.322 5.322 14 C -0.057 4.057 15 C -0.077 4.077 16 H 0.098 0.902 17 H 0.068 0.932 18 H 0.066 0.934 19 H 0.051 0.949 20 H 0.101 0.899 21 H 0.031 0.969 22 H 0.166 0.834 23 H 0.103 0.897 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.189 -3.660 -2.282 6.013 hybrid contribution -0.404 0.909 -0.784 1.267 sum 3.785 -2.751 -3.067 5.594 Atomic orbital electron populations 1.69647 1.09260 1.30760 1.39312 1.27052 0.95635 1.05254 0.90950 0.85149 0.78933 0.75710 0.79564 1.18570 1.18128 1.19173 1.19839 0.94863 0.91654 1.45733 0.90752 1.19723 0.95015 0.93106 0.92015 1.21514 0.96005 0.92885 1.28343 1.20039 0.94133 0.97021 0.96070 1.21810 0.98561 0.89357 0.96003 1.60043 1.09706 1.08703 1.53797 1.21870 0.87930 0.99281 0.96652 1.20161 0.96706 0.94128 0.96710 0.90222 0.93174 0.93411 0.94896 0.89870 0.96902 0.83389 0.89657 0.96793 0.94097 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.94 12.88 21.89 0.28 -47.66 15 2 C 0.02 1.23 5.50 85.37 0.47 1.69 15 3 Si 0.99 40.15 29.56 68.60 2.03 42.18 15 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 15 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 6 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 7 C -0.49 -27.80 8.52 23.22 0.20 -27.61 15 8 H 0.07 4.09 5.91 -2.91 -0.02 4.08 15 9 C 0.02 1.23 9.04 21.98 0.20 1.43 15 10 C -0.38 -19.51 5.54 -16.72 -0.09 -19.60 15 11 C -0.04 -1.60 5.87 30.04 0.18 -1.42 15 12 C 0.07 2.67 6.55 86.28 0.56 3.23 15 13 N -0.69 -23.43 6.76 -513.91 -3.48 -26.91 15 14 C 0.07 2.59 6.56 86.42 0.57 3.16 15 15 C -0.04 -1.72 6.22 30.18 0.19 -1.54 15 16 H 0.29 14.41 8.29 -92.71 -0.77 13.64 15 17 H 0.05 3.07 7.39 -2.91 -0.02 3.05 15 18 H 0.05 2.26 5.83 -2.39 -0.01 2.25 15 19 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 20 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 21 H 0.01 0.50 8.10 -2.39 -0.02 0.48 15 22 H 0.35 9.26 8.90 -89.69 -0.80 8.46 15 23 H 0.09 2.52 8.14 -2.39 -0.02 2.51 15 24 H 0.01 0.52 8.10 -2.39 -0.02 0.50 15 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.04 1.67 7.97 -2.39 -0.02 1.65 15 Total: -1.00 -60.69 217.38 1.47 -59.22 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.37 Total: 13.82 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 2.27 Total: -40.65 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -3.19 Total: -74.56 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -60.69 1.47 -59.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280397.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.968 kcal (2) G-P(sol) polarization free energy of solvation -60.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds