Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00153 * 2 1 4 4 H 1.48498 * 109.46791 * 269.99967 * 3 2 1 5 5 H 1.48498 * 109.46855 * 29.99716 * 3 2 1 6 6 H 1.48501 * 109.46885 * 149.99765 * 3 2 1 7 7 C 1.37879 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99699 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.54038 * 113.55961 * 180.02562 * 9 7 2 11 11 C 1.52466 * 86.61261 * 139.08246 * 10 9 7 12 12 C 1.52055 * 122.51574 * 103.80886 * 11 10 9 13 13 O 1.43615 * 88.09597 * 98.61848 * 12 11 10 14 14 C 1.43612 * 88.74027 * 26.88128 * 13 12 11 15 15 C 1.52463 * 88.55300 * 335.37703 * 11 10 9 16 16 H 0.97006 * 119.99902 * 0.02562 * 1 2 3 17 17 H 1.09002 * 112.80618 * 48.97389 * 9 7 2 18 18 H 1.08998 * 113.69314 * 24.65632 * 10 9 7 19 19 H 1.09001 * 113.77789 * 253.52385 * 10 9 7 20 20 H 1.09003 * 113.45373 * 343.81221 * 12 11 10 21 21 H 1.08999 * 113.44969 * 213.42414 * 12 11 10 22 22 H 1.08999 * 113.45202 * 87.92853 * 14 13 12 23 23 H 1.08997 * 113.44759 * 218.31438 * 14 13 12 24 24 H 1.09001 * 113.68877 * 139.04739 * 15 11 10 25 25 H 1.08998 * 113.68852 * 270.19099 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.1658 -3.7384 -0.0005 11 6 1.1871 -4.3491 0.9963 12 6 0.1768 -5.4147 0.6017 13 8 1.0820 -6.3989 1.1257 14 6 1.6050 -5.3988 2.0139 15 6 0.7746 -2.9371 1.3974 16 1 -0.4850 0.8401 -0.0004 17 1 0.4682 -2.5351 -0.7583 18 1 3.1557 -3.5520 0.4159 19 1 2.1993 -4.2600 -0.9571 20 1 0.0270 -5.4930 -0.4752 21 1 -0.7605 -5.3497 1.1543 22 1 1.0623 -5.3293 2.9566 23 1 2.6842 -5.4633 2.1522 24 1 -0.2983 -2.8212 1.5507 25 1 1.3681 -2.5223 2.2121 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375050.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = 2.768005 kcal Electronic energy + Delta-G solvation = -9632.780077 eV Core-core repulsion = 7806.218766 eV Total energy + Delta-G solvation = -1826.561312 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.60537 -36.09514 -32.21507 -27.79224 -25.87273 -24.94279 -24.57777 -20.24051 -17.55122 -16.53679 -15.52360 -15.15816 -15.06144 -14.39817 -13.58267 -12.66628 -12.09422 -11.68724 -11.26926 -11.01083 -10.97515 -10.59858 -10.23937 -9.97956 -9.51269 -9.20977 -8.87678 -8.62280 -8.33051 -6.01911 -4.04791 3.30317 3.37197 3.40208 4.41958 4.44565 4.83074 5.18220 5.33101 5.67960 5.75246 5.95526 6.01276 6.31409 6.40549 6.44782 6.56289 6.67941 6.79663 6.96221 7.23887 7.50141 7.80998 7.98327 8.43917 8.97622 9.59442 11.08068 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.111364 B = 0.012215 C = 0.011806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 251.366475 B = 2291.706097 C = 2371.151932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.109 4.109 11 C -0.157 4.157 12 C 0.053 3.947 13 O -0.382 6.382 14 C 0.037 3.963 15 C -0.113 4.113 16 H 0.260 0.740 17 H 0.051 0.949 18 H 0.074 0.926 19 H 0.049 0.951 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -5.735 2.340 6.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.024 3.976 10 C -0.146 4.146 11 C -0.158 4.158 12 C -0.024 4.024 13 O -0.301 6.301 14 C -0.039 4.039 15 C -0.151 4.151 16 H 0.070 0.930 17 H 0.069 0.931 18 H 0.092 0.908 19 H 0.068 0.932 20 H 0.100 0.900 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.053 -5.899 2.289 6.415 hybrid contribution 0.329 1.061 0.125 1.118 sum 1.382 -4.839 2.414 5.581 Atomic orbital electron populations 1.69963 1.05978 1.26546 1.50377 1.25017 0.94822 0.99090 0.94931 0.86641 0.79917 0.83596 0.78123 1.20659 1.21271 1.19888 1.21110 0.92774 0.90443 1.50640 0.92522 1.19935 0.93767 0.91214 0.92657 1.22686 0.97408 0.98703 0.95804 1.23650 0.98594 0.95448 0.98076 1.23309 0.93476 0.85606 0.99959 1.89772 1.53764 1.31729 1.54785 1.23513 0.99663 0.86608 0.94154 1.22743 0.99541 0.91118 1.01719 0.93031 0.93073 0.90788 0.93242 0.90035 0.90663 0.90963 0.90355 0.93046 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.28 55.43 0.74 -25.01 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 15 7 C -0.51 -14.01 8.76 -34.44 -0.30 -14.31 15 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 15 9 C 0.04 1.06 3.42 -90.72 -0.31 0.75 15 10 C -0.11 -2.28 7.48 -26.46 -0.20 -2.48 15 11 C -0.16 -3.04 1.39 -156.05 -0.22 -3.26 15 12 C 0.05 0.93 8.59 26.01 0.22 1.16 15 13 O -0.38 -7.06 12.74 -35.23 -0.45 -7.51 15 14 C 0.04 0.64 8.59 26.01 0.22 0.86 15 15 C -0.11 -2.52 7.48 -26.46 -0.20 -2.72 15 16 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 17 H 0.05 1.37 8.13 -51.93 -0.42 0.95 15 18 H 0.07 1.53 8.09 -51.93 -0.42 1.10 15 19 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 20 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 23 H 0.08 1.24 8.14 -51.93 -0.42 0.81 15 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.07 1.60 8.09 -51.93 -0.42 1.18 15 LS Contribution 217.34 15.07 3.28 3.28 Total: -1.00 -28.69 217.34 -5.68 -34.37 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -3.34 Total: -2.92 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -0.88 Total: -18.34 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.74 Total: -25.01 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.45 Total: -7.51 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.69 -5.68 -34.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375050.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.136 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds