Wall clock time and date at job start Mon Mar 30 2020 01:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.08996 * 115.52170 * 330.58358 * 10 9 7 12 12 C 1.52934 * 117.45506 * 185.10949 * 10 9 7 13 13 H 1.09000 * 119.49515 * 4.10819 * 12 10 9 14 14 C 1.54557 * 118.19845 * 159.17482 * 12 10 9 15 15 C 1.58271 * 101.39560 * 86.39901 * 14 12 10 16 16 N 1.48533 * 103.38517 * 322.39468 * 15 14 12 17 17 C 1.47938 * 105.80225 * 39.35609 * 16 15 14 18 18 H 1.09004 * 117.67883 * 115.48560 * 17 16 15 19 19 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 21 21 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 22 22 H 1.09008 * 110.71863 * 203.93323 * 14 12 10 23 23 H 1.08994 * 110.72305 * 327.20727 * 14 12 10 24 24 H 1.08995 * 110.41195 * 203.99160 * 15 14 12 25 25 H 1.08997 * 110.91553 * 81.03169 * 15 14 12 26 26 H 1.00904 * 110.99835 * 278.86019 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 3.2018 -3.4622 -0.4826 12 6 1.6762 -5.0764 -0.1203 13 1 0.6051 -5.2129 -0.2693 14 6 2.6157 -6.2025 -0.6081 15 6 3.2903 -6.6569 0.7496 16 7 3.4691 -5.3810 1.4887 17 6 2.2505 -4.5861 1.2207 18 1 1.5992 -4.3578 2.0644 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6241 -2.5566 0.8903 21 1 0.6247 -2.5571 -0.8897 22 1 2.0429 -7.0197 -1.0468 23 1 3.3446 -5.8154 -1.3200 24 1 4.2541 -7.1278 0.5562 25 1 2.6372 -7.3329 1.3015 26 1 4.2949 -4.8938 1.1744 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418186.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:26 Heat of formation + Delta-G solvation = -4.743985 kcal Electronic energy + Delta-G solvation = -9295.729119 eV Core-core repulsion = 7566.560725 eV Total energy + Delta-G solvation = -1729.168394 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.71884 -35.87928 -33.52977 -30.34786 -29.24733 -25.30352 -22.92466 -21.78495 -21.04154 -18.99141 -17.05138 -16.49748 -15.64023 -15.03007 -14.87836 -14.36882 -13.88396 -13.36778 -13.32465 -12.91931 -12.53105 -12.25611 -11.95265 -11.69927 -11.25089 -10.91150 -10.54910 -10.45142 -9.63291 -8.72366 -6.43123 1.51636 1.60496 1.80055 2.53213 2.59312 3.12691 3.22306 3.62153 3.81562 3.87686 4.21723 4.28116 4.40736 4.68338 4.81203 4.92910 4.94729 5.05805 5.12865 5.22487 5.40551 5.72311 5.94678 6.12518 6.31334 6.52834 7.38383 8.67979 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.094846 B = 0.010865 C = 0.010359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.144954 B = 2576.413246 C = 2702.335631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.040 4.040 3 Si 1.120 2.880 4 H -0.282 1.282 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.616 4.616 8 H 0.051 0.949 9 C 0.040 3.960 10 C -0.119 4.119 11 H 0.087 0.913 12 C -0.188 4.188 13 H 0.103 0.897 14 C -0.120 4.120 15 C 0.048 3.952 16 N -0.653 5.653 17 C 0.003 3.997 18 H 0.110 0.890 19 H 0.254 0.746 20 H -0.009 1.009 21 H -0.009 1.009 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 -10.387 -0.378 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.941 3.059 4 H -0.207 1.207 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.653 4.653 8 H 0.069 0.931 9 C 0.003 3.997 10 C -0.139 4.139 11 H 0.105 0.895 12 C -0.207 4.207 13 H 0.121 0.879 14 C -0.159 4.159 15 C -0.081 4.081 16 N -0.281 5.281 17 C -0.108 4.108 18 H 0.128 0.872 19 H 0.063 0.937 20 H 0.010 0.990 21 H 0.009 0.991 22 H 0.113 0.887 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.417 -9.046 0.329 11.096 hybrid contribution -0.259 -1.244 -0.932 1.576 sum 6.158 -10.289 -0.604 12.007 Atomic orbital electron populations 1.70927 1.07971 1.29758 1.48795 1.27522 0.96595 1.06981 0.92578 0.82904 0.74107 0.70825 0.78094 1.20748 1.19369 1.19255 1.22443 0.94642 0.93123 1.55109 0.93101 1.18672 0.93872 0.93158 0.94018 1.22766 1.00090 0.90378 1.00658 0.89526 1.23929 1.00226 0.94903 1.01649 0.87924 1.23333 0.97803 0.96230 0.98514 1.24014 1.01709 0.91840 0.90524 1.62444 1.02970 1.05073 1.57566 1.23809 0.95244 1.01139 0.90578 0.87206 0.93662 0.99041 0.99056 0.88682 0.91049 0.88157 0.89465 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.50 13.65 21.45 0.29 -59.20 15 2 C -0.04 -2.36 5.46 84.65 0.46 -1.90 15 3 Si 1.12 51.04 29.90 68.60 2.05 53.09 15 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 7 C -0.62 -36.29 9.08 25.60 0.23 -36.06 15 8 H 0.05 2.91 7.68 -2.91 -0.02 2.89 15 9 C 0.04 2.17 4.56 29.85 0.14 2.31 15 10 C -0.12 -5.16 5.29 -10.80 -0.06 -5.22 15 11 H 0.09 3.75 8.00 -2.39 -0.02 3.73 15 12 C -0.19 -6.55 6.67 -9.98 -0.07 -6.62 15 13 H 0.10 3.62 8.14 -2.39 -0.02 3.60 15 14 C -0.12 -3.08 7.10 33.01 0.23 -2.84 15 15 C 0.05 1.13 7.64 87.87 0.67 1.80 15 16 N -0.65 -20.03 7.50 -473.83 -3.55 -23.58 15 17 C 0.00 0.10 7.15 45.04 0.32 0.42 15 18 H 0.11 4.42 8.11 -2.38 -0.02 4.40 15 19 H 0.25 16.35 7.22 -92.71 -0.67 15.68 15 20 H -0.01 -0.50 7.80 -2.39 -0.02 -0.52 15 21 H -0.01 -0.50 8.01 -2.38 -0.02 -0.52 15 22 H 0.09 2.01 8.14 -2.38 -0.02 1.99 15 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.34 9.97 8.82 -89.69 -0.79 9.18 15 Total: -1.00 -66.32 221.67 1.19 -65.13 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.46 Total: 12.68 kcal Atomic # 6 Polarization: -50.05 SS G_CDS: 1.93 Total: -48.12 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.26 Total: -82.78 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -66.32 1.19 -65.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418186.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.384 kcal (2) G-P(sol) polarization free energy of solvation -66.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds