Wall clock time and date at job start Mon Mar 30 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48501 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47266 * 300.00166 * 3 2 1 6 6 H 1.48500 * 109.47223 * 60.00223 * 3 2 1 7 7 C 1.37879 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99804 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99775 * 359.97438 * 7 2 1 10 10 H 1.09000 * 115.60192 * 61.67688 * 9 7 2 11 11 C 1.53598 * 117.53184 * 207.54611 * 9 7 2 12 12 H 1.08995 * 117.34523 * 214.71822 * 11 9 7 13 13 C 1.52946 * 115.59442 * 356.39431 * 11 9 7 14 14 C 1.52903 * 109.60313 * 88.60262 * 13 11 9 15 15 C 1.53320 * 108.47147 * 307.55339 * 14 13 11 16 16 N 1.46651 * 108.81935 * 73.55271 * 15 14 13 17 17 C 1.45861 * 112.57586 * 304.12454 * 16 15 14 18 18 H 1.08994 * 114.63274 * 167.73953 * 17 16 15 19 19 H 0.96995 * 120.00217 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.46172 * 209.77280 * 13 11 9 21 21 H 1.09001 * 109.46426 * 329.74456 * 13 11 9 22 22 H 1.08995 * 109.73204 * 187.74673 * 14 13 11 23 23 H 1.08997 * 109.55961 * 67.26084 * 14 13 11 24 24 H 1.09001 * 109.57780 * 313.75459 * 15 14 13 25 25 H 1.08994 * 109.57993 * 193.35722 * 15 14 13 26 26 H 1.00897 * 110.99975 * 178.99933 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6113 -2.6736 -0.8656 11 6 1.9420 -3.7180 0.6288 12 1 1.7526 -4.6907 0.1750 13 6 3.3732 -3.4873 1.1166 14 6 3.3486 -2.9935 2.5635 15 6 2.4068 -1.7867 2.6490 16 7 1.0220 -2.2594 2.5513 17 6 0.7810 -3.0411 1.3436 18 1 -0.1649 -3.5825 1.3341 19 1 -0.4850 0.8400 0.0004 20 1 3.9363 -4.4176 1.0429 21 1 3.8488 -2.7251 0.4995 22 1 4.3524 -2.6981 2.8686 23 1 2.9861 -3.7890 3.2145 24 1 2.6172 -1.1004 1.8287 25 1 2.5523 -1.2765 3.6011 26 1 0.3719 -1.4910 2.6205 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260434823.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:11 Heat of formation + Delta-G solvation = 20.721750 kcal Electronic energy + Delta-G solvation = -9992.614128 eV Core-core repulsion = 8264.550011 eV Total energy + Delta-G solvation = -1728.064117 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.60490 -32.65324 -31.63772 -30.81221 -26.16601 -23.80282 -21.68741 -19.64407 -17.58050 -16.30851 -15.35305 -14.68550 -13.90093 -13.21490 -12.70778 -12.36074 -12.07656 -11.83780 -11.09671 -10.93054 -10.66599 -10.38521 -9.90204 -9.69127 -9.29336 -8.71536 -8.61910 -8.30467 -6.93793 -6.12394 -4.03680 3.21672 3.31161 3.33632 4.32627 5.06574 5.27695 5.55534 5.84084 5.87627 6.18727 6.30662 6.37919 6.56103 6.63450 6.72852 6.84704 6.97634 7.08996 7.27000 7.51182 7.62036 7.84575 8.26309 8.44555 8.64960 8.84226 9.45927 10.98117 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.055590 B = 0.021356 C = 0.019685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.570783 B = 1310.795763 C = 1422.088151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.065 3.935 3 Si 0.883 3.117 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.485 4.485 8 H 0.066 0.934 9 C -0.011 4.011 10 H 0.055 0.945 11 C -0.186 4.186 12 H 0.078 0.922 13 C -0.079 4.079 14 C -0.107 4.107 15 C 0.029 3.971 16 N -0.651 5.651 17 C 0.032 3.968 18 H 0.085 0.915 19 H 0.261 0.739 20 H 0.041 0.959 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.041 0.959 26 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 -2.388 2.685 5.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.138 4.138 3 Si 0.711 3.289 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.523 4.523 8 H 0.084 0.916 9 C -0.031 4.031 10 H 0.073 0.927 11 C -0.205 4.205 12 H 0.096 0.904 13 C -0.117 4.117 14 C -0.145 4.145 15 C -0.100 4.100 16 N -0.280 5.280 17 C -0.080 4.080 18 H 0.102 0.898 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.060 0.940 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.750 -2.806 3.076 5.603 hybrid contribution 0.297 1.505 -0.676 1.676 sum 4.047 -1.301 2.400 4.882 Atomic orbital electron populations 1.69992 1.05830 1.26488 1.49495 1.24974 0.94852 0.98745 0.95226 0.86662 0.80339 0.84085 0.77850 1.19546 1.20853 1.20793 1.20434 0.92655 0.89211 1.50001 0.91650 1.20476 0.97915 0.91186 0.93568 0.92664 1.22416 0.93127 0.97512 1.07449 0.90412 1.20905 0.95167 0.99254 0.96343 1.21468 0.97837 0.98492 0.96737 1.22458 0.88944 0.97370 1.01236 1.59770 1.04908 1.27329 1.35990 1.21748 0.94692 1.00867 0.90662 0.89762 0.92960 0.94056 0.91434 0.93389 0.92841 0.88715 0.94009 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.63 13.29 55.43 0.74 -23.89 15 2 C 0.06 1.73 5.22 -17.82 -0.09 1.64 15 3 Si 0.88 20.61 29.54 -169.99 -5.02 15.59 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.49 -12.80 5.18 -34.44 -0.18 -12.98 15 8 H 0.07 1.73 5.70 -52.49 -0.30 1.43 15 9 C -0.01 -0.28 5.48 -91.79 -0.50 -0.79 15 10 H 0.06 1.49 8.14 -51.93 -0.42 1.07 15 11 C -0.19 -4.11 6.27 -90.74 -0.57 -4.68 15 12 H 0.08 1.59 8.14 -51.93 -0.42 1.16 15 13 C -0.08 -1.61 5.70 -26.81 -0.15 -1.76 15 14 C -0.11 -2.10 6.05 -26.62 -0.16 -2.26 15 15 C 0.03 0.62 6.23 -3.79 -0.02 0.60 15 16 N -0.65 -14.84 6.75 -108.23 -0.73 -15.57 15 17 C 0.03 0.75 6.75 -69.00 -0.47 0.28 15 18 H 0.08 1.93 8.14 -51.93 -0.42 1.51 15 19 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 20 H 0.04 0.74 8.14 -51.93 -0.42 0.31 15 21 H 0.07 1.45 6.00 -51.93 -0.31 1.14 15 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.10 2.29 4.07 -51.93 -0.21 2.08 15 25 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 26 H 0.34 8.05 8.89 -39.29 -0.35 7.70 15 LS Contribution 207.73 15.07 3.13 3.13 Total: -1.00 -27.14 207.73 -7.30 -34.44 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.27 Total: 6.26 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.15 Total: -19.95 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.01 Total: -39.47 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -27.14 -7.30 -34.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434823.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.158 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds