Wall clock time and date at job start Mon Mar 30 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48501 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47266 * 300.00166 * 3 2 1 6 6 H 1.48500 * 109.47223 * 60.00223 * 3 2 1 7 7 C 1.37879 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99804 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99775 * 359.97438 * 7 2 1 10 10 H 1.09000 * 115.60192 * 61.67688 * 9 7 2 11 11 C 1.53598 * 117.53184 * 207.54611 * 9 7 2 12 12 H 1.08995 * 117.34523 * 214.71822 * 11 9 7 13 13 C 1.52946 * 115.59442 * 356.39431 * 11 9 7 14 14 C 1.52903 * 109.60313 * 88.60262 * 13 11 9 15 15 C 1.53320 * 108.47147 * 307.55339 * 14 13 11 16 16 N 1.46651 * 108.81935 * 73.55271 * 15 14 13 17 17 C 1.45861 * 112.57586 * 304.12454 * 16 15 14 18 18 H 1.08994 * 114.63274 * 167.73953 * 17 16 15 19 19 H 0.96995 * 120.00217 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.46172 * 209.77280 * 13 11 9 21 21 H 1.09001 * 109.46426 * 329.74456 * 13 11 9 22 22 H 1.08995 * 109.73204 * 187.74673 * 14 13 11 23 23 H 1.08997 * 109.55961 * 67.26084 * 14 13 11 24 24 H 1.09001 * 109.57780 * 313.75459 * 15 14 13 25 25 H 1.08994 * 109.57993 * 193.35722 * 15 14 13 26 26 H 1.00897 * 110.99975 * 178.99933 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6113 -2.6736 -0.8656 11 6 1.9420 -3.7180 0.6288 12 1 1.7526 -4.6907 0.1750 13 6 3.3732 -3.4873 1.1166 14 6 3.3486 -2.9935 2.5635 15 6 2.4068 -1.7867 2.6490 16 7 1.0220 -2.2594 2.5513 17 6 0.7810 -3.0411 1.3436 18 1 -0.1649 -3.5825 1.3341 19 1 -0.4850 0.8400 0.0004 20 1 3.9363 -4.4176 1.0429 21 1 3.8488 -2.7251 0.4995 22 1 4.3524 -2.6981 2.8686 23 1 2.9861 -3.7890 3.2145 24 1 2.6172 -1.1004 1.8287 25 1 2.5523 -1.2765 3.6011 26 1 0.3719 -1.4910 2.6205 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434823.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:10 Heat of formation + Delta-G solvation = 3.170322 kcal Electronic energy + Delta-G solvation = -9993.375215 eV Core-core repulsion = 8264.550011 eV Total energy + Delta-G solvation = -1728.825204 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.39791 -34.59893 -33.47888 -32.50614 -28.17001 -25.54886 -23.40172 -21.58111 -19.34696 -18.19901 -17.20732 -16.58405 -15.68888 -15.02139 -14.51033 -14.11942 -13.71283 -13.70611 -12.96754 -12.81401 -12.43927 -12.16491 -11.56078 -11.48517 -11.06219 -10.68664 -10.51527 -10.16260 -8.80504 -8.15860 -6.10440 1.36739 1.41020 1.50023 2.38750 3.09041 3.36392 3.79710 4.19996 4.25087 4.52122 4.55172 4.67457 4.71261 5.01167 5.09720 5.18528 5.34106 5.39025 5.50289 5.57324 5.81590 5.82546 6.30382 6.60746 6.75315 6.81258 7.40707 8.95534 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.055590 B = 0.021356 C = 0.019685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.570783 B = 1310.795763 C = 1422.088151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.021 3.979 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.482 4.482 8 H 0.064 0.936 9 C -0.045 4.045 10 H 0.026 0.974 11 C -0.165 4.165 12 H 0.097 0.903 13 C -0.080 4.080 14 C -0.102 4.102 15 C 0.023 3.977 16 N -0.646 5.646 17 C 0.028 3.972 18 H 0.084 0.916 19 H 0.260 0.740 20 H 0.072 0.928 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 -2.781 3.487 6.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.520 4.520 8 H 0.082 0.918 9 C -0.065 4.065 10 H 0.044 0.956 11 C -0.184 4.184 12 H 0.115 0.885 13 C -0.118 4.118 14 C -0.140 4.140 15 C -0.106 4.106 16 N -0.274 5.274 17 C -0.084 4.084 18 H 0.102 0.898 19 H 0.069 0.931 20 H 0.091 0.909 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.251 -3.211 3.879 7.276 hybrid contribution -0.175 1.575 -0.939 1.842 sum 5.076 -1.637 2.940 6.090 Atomic orbital electron populations 1.70103 1.07195 1.27069 1.51002 1.25618 0.95449 1.01633 0.95148 0.85743 0.79522 0.80408 0.77585 1.18697 1.21067 1.20525 1.20562 0.92543 0.89796 1.49094 0.91834 1.20403 0.99578 0.92844 0.93724 0.95586 1.22590 0.93877 0.96823 1.05067 0.88535 1.20957 0.93825 1.00455 0.96515 1.21452 0.98711 0.97504 0.96292 1.22513 0.88732 0.98247 1.01112 1.59861 1.05475 1.26844 1.35201 1.21805 0.95706 1.00962 0.89918 0.89799 0.93105 0.90905 0.92799 0.90630 0.92215 0.91132 0.92359 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.89 13.29 21.45 0.28 -51.61 15 2 C 0.02 1.12 5.22 84.66 0.44 1.56 15 3 Si 0.94 42.21 29.54 68.60 2.03 44.24 15 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 7 C -0.48 -25.39 5.18 25.60 0.13 -25.26 15 8 H 0.06 3.31 5.70 -2.91 -0.02 3.30 15 9 C -0.05 -2.29 5.48 -11.55 -0.06 -2.36 15 10 H 0.03 1.45 8.14 -2.39 -0.02 1.43 15 11 C -0.16 -6.98 6.27 -10.87 -0.07 -7.05 15 12 H 0.10 3.69 8.14 -2.39 -0.02 3.68 15 13 C -0.08 -3.00 5.70 30.54 0.17 -2.82 15 14 C -0.10 -3.63 6.05 30.67 0.19 -3.44 15 15 C 0.02 0.94 6.23 86.46 0.54 1.48 15 16 N -0.65 -28.77 6.75 -496.33 -3.35 -32.12 15 17 C 0.03 1.29 6.75 44.64 0.30 1.59 15 18 H 0.08 3.83 8.14 -2.39 -0.02 3.81 15 19 H 0.26 14.09 8.31 -92.71 -0.77 13.32 15 20 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 21 H 0.05 2.18 6.00 -2.39 -0.01 2.17 15 22 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.06 2.07 8.14 -2.39 -0.02 2.06 15 24 H 0.07 3.32 4.07 -2.39 -0.01 3.31 15 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 26 H 0.33 15.59 8.89 -89.70 -0.80 14.80 15 Total: -1.00 -56.48 207.73 0.98 -55.50 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.38 Total: 20.29 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 1.64 Total: -36.30 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -3.07 Total: -83.73 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -56.48 0.98 -55.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434823.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.669 kcal (2) G-P(sol) polarization free energy of solvation -56.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds