Wall clock time and date at job start Mon Mar 30 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35034 * 1 3 3 C 1.40070 * 119.99842 * 2 1 4 4 H 1.08006 * 119.99336 * 155.03564 * 3 2 1 5 5 C 1.40301 * 120.00092 * 335.03515 * 3 2 1 6 6 N 1.30686 * 120.00394 * 342.76326 * 5 3 2 7 7 Si 1.86802 * 119.99995 * 162.75554 * 5 3 2 8 8 H 1.48500 * 109.46891 * 60.00237 * 7 5 3 9 9 H 1.48500 * 109.47311 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47414 * 300.00518 * 7 5 3 11 11 C 1.50703 * 120.00165 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.64342 * 3.14785 * 11 2 1 13 13 C 1.54601 * 110.72363 * 240.00354 * 11 2 1 14 14 C 1.53997 * 105.13599 * 219.68179 * 13 11 2 15 15 N 1.47902 * 107.05797 * 358.77316 * 14 13 11 16 16 C 1.48529 * 105.82285 * 25.33196 * 15 14 13 17 17 H 1.08000 * 120.00133 * 354.27872 * 1 2 3 18 18 H 1.08004 * 119.99830 * 174.00637 * 1 2 3 19 19 H 0.96997 * 120.00439 * 179.97438 * 6 5 3 20 20 H 1.08996 * 110.30692 * 338.59724 * 13 11 2 21 21 H 1.08995 * 110.30711 * 100.66811 * 13 11 2 22 22 H 1.08997 * 109.91458 * 118.12711 * 14 13 11 23 23 H 1.08997 * 109.91230 * 239.22255 * 14 13 11 24 24 H 1.00900 * 110.99599 * 145.84503 * 15 14 13 25 25 H 1.08995 * 110.67072 * 202.35885 * 16 15 14 26 26 H 1.08999 * 110.67082 * 79.22280 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0550 1.2567 0.3948 5 6 1.4475 2.3713 -0.5128 6 7 0.3967 2.2744 -1.2838 7 14 2.1461 4.0522 -0.0934 8 1 3.5499 4.1377 -0.5700 9 1 1.3335 5.1050 -0.7541 10 1 2.1101 4.2503 1.3780 11 6 2.1039 -1.3051 -0.0006 12 1 1.4140 -2.1472 -0.0570 13 6 3.0035 -1.4180 1.2517 14 6 4.3091 -2.0638 0.7519 15 7 4.1377 -2.3266 -0.6934 16 6 3.1245 -1.3485 -1.1655 17 1 -0.5400 0.9306 0.0932 18 1 -0.5400 -0.9302 -0.0977 19 1 -0.0205 3.0752 -1.6381 20 1 3.2041 -0.4290 1.6637 21 1 2.5297 -2.0508 2.0020 22 1 5.1445 -1.3814 0.9087 23 1 4.4883 -2.9982 1.2836 24 1 5.0096 -2.2111 -1.1878 25 1 2.6484 -1.6993 -2.0811 26 1 3.5771 -0.3685 -1.3170 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613987.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:59 Heat of formation + Delta-G solvation = 8.656515 kcal Electronic energy + Delta-G solvation = -9573.840312 eV Core-core repulsion = 7845.253008 eV Total energy + Delta-G solvation = -1728.587304 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.91164 -34.29186 -31.28320 -28.66074 -27.08037 -25.06525 -20.79182 -20.25151 -18.91661 -16.07813 -15.22841 -14.94003 -14.41993 -13.11350 -12.83175 -12.19715 -11.79139 -11.62027 -11.40053 -10.96200 -10.85734 -10.57442 -10.27856 -9.98770 -9.47395 -9.12485 -8.82664 -7.98731 -7.17565 -6.39158 -4.03771 3.11770 3.20433 3.23817 4.12012 4.20774 4.90626 5.29407 5.47415 5.65618 5.98573 6.09836 6.25728 6.49526 6.61803 6.67436 6.92361 6.97852 7.04404 7.39781 7.46326 7.70068 7.85046 8.24390 8.51901 9.04690 9.30839 9.51470 10.60504 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.059186 B = 0.015993 C = 0.014414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.968227 B = 1750.362893 C = 1942.071905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.343 4.343 2 C 0.037 3.963 3 C -0.473 4.473 4 H 0.059 0.941 5 C 0.077 3.923 6 N -0.803 5.803 7 Si 0.891 3.109 8 H -0.272 1.272 9 H -0.282 1.282 10 H -0.269 1.269 11 C -0.048 4.048 12 H 0.060 0.940 13 C -0.122 4.122 14 C 0.042 3.958 15 N -0.682 5.682 16 C 0.051 3.949 17 H 0.089 0.911 18 H 0.039 0.961 19 H 0.270 0.730 20 H 0.074 0.926 21 H 0.057 0.943 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.326 0.674 25 H 0.069 0.931 26 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -2.641 1.767 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.383 4.383 2 C 0.035 3.965 3 C -0.504 4.504 4 H 0.077 0.923 5 C -0.138 4.138 6 N -0.431 5.431 7 Si 0.717 3.283 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.194 1.194 11 C -0.068 4.068 12 H 0.078 0.922 13 C -0.160 4.160 14 C -0.088 4.088 15 N -0.310 5.310 16 C -0.077 4.077 17 H 0.107 0.893 18 H 0.058 0.942 19 H 0.081 0.919 20 H 0.093 0.907 21 H 0.076 0.924 22 H 0.050 0.950 23 H 0.083 0.917 24 H 0.140 0.860 25 H 0.087 0.913 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.080 -3.098 1.682 6.183 hybrid contribution 0.795 1.749 0.084 1.923 sum 5.875 -1.349 1.767 6.281 Atomic orbital electron populations 1.23365 0.94621 0.97516 1.22844 1.18247 0.92974 0.90280 0.94997 1.18931 1.00592 0.93062 1.37853 0.92307 1.25702 0.94652 1.00239 0.93185 1.69824 1.19149 1.30035 1.24062 0.86674 0.79458 0.82529 0.79630 1.19667 1.20760 1.19371 1.21111 0.95246 0.97900 0.92504 0.92202 1.22431 0.94515 1.00609 0.98427 1.22606 0.97554 0.98640 0.89969 1.63117 1.12302 1.52143 1.03399 1.23060 0.92732 0.93740 0.98171 0.89292 0.94211 0.91876 0.90733 0.92407 0.94963 0.91683 0.86023 0.91271 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.62 12.94 29.59 0.38 -9.24 15 2 C 0.04 0.99 4.72 -105.07 -0.50 0.49 15 3 C -0.47 -12.91 7.46 -38.12 -0.28 -13.19 15 4 H 0.06 1.55 7.17 -52.48 -0.38 1.18 15 5 C 0.08 2.07 5.09 -17.26 -0.09 1.98 15 6 N -0.80 -22.57 11.03 55.57 0.61 -21.95 15 7 Si 0.89 20.08 29.60 -169.99 -5.03 15.05 15 8 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 11 C -0.05 -1.10 3.27 -89.91 -0.29 -1.39 15 12 H 0.06 1.37 7.91 -51.93 -0.41 0.96 15 13 C -0.12 -2.40 6.41 -25.37 -0.16 -2.57 15 14 C 0.04 0.71 7.52 -2.75 -0.02 0.69 15 15 N -0.68 -12.15 7.51 -110.09 -0.83 -12.98 15 16 C 0.05 1.07 6.93 -1.90 -0.01 1.06 15 17 H 0.09 2.66 6.25 -52.49 -0.33 2.33 15 18 H 0.04 1.06 7.94 -52.48 -0.42 0.64 15 19 H 0.27 7.03 8.29 -40.82 -0.34 6.69 15 20 H 0.07 1.55 6.77 -51.93 -0.35 1.20 15 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.33 5.01 8.92 -39.29 -0.35 4.66 15 25 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 26 H 0.06 1.23 7.17 -51.93 -0.37 0.86 15 LS Contribution 216.79 15.07 3.27 3.27 Total: -1.00 -28.62 216.79 -6.38 -35.01 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.43 Total: 3.78 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.98 Total: -22.17 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.21 Total: -34.93 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -28.62 -6.38 -35.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613987.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.664 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds