Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47551 * 240.00167 * 3 2 1 5 5 H 1.48501 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47095 * 120.00344 * 3 2 1 7 7 C 1.37882 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99375 * 359.97438 * 7 2 1 10 10 O 1.42908 * 109.47125 * 180.02562 * 9 7 2 11 11 C 1.36224 * 117.00133 * 179.97438 * 10 9 7 12 12 C 1.40117 * 126.05568 * 359.97169 * 11 10 9 13 13 N 1.30862 * 108.35598 * 180.02562 * 12 11 10 14 14 N 1.40074 * 108.32761 * 0.02562 * 13 12 11 15 15 H 0.96997 * 126.07985 * 179.97438 * 14 13 12 16 16 C 1.35596 * 126.05067 * 179.97438 * 11 10 9 17 17 H 0.97000 * 119.99603 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47596 * 60.00012 * 9 7 2 19 19 H 1.09007 * 109.47427 * 299.99696 * 9 7 2 20 20 H 1.07997 * 125.81831 * 0.06004 * 12 11 10 21 21 H 1.07995 * 126.20735 * 0.24589 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.6588 -4.8441 0.0000 12 6 0.2969 -5.1732 0.0011 13 7 0.1880 -6.4773 0.0019 14 7 1.4764 -7.0268 0.0019 15 1 1.6942 -7.9720 0.0027 16 6 2.3668 -6.0006 -0.0004 17 1 -0.4849 0.8401 0.0004 18 1 0.6240 -2.5567 -0.8903 19 1 0.6247 -2.5571 0.8897 20 1 -0.5231 -4.4704 0.0008 21 1 3.4431 -6.0897 0.0026 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260851134.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = 31.674722 kcal Electronic energy + Delta-G solvation = -9040.430576 eV Core-core repulsion = 7111.582410 eV Total energy + Delta-G solvation = -1928.848166 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.62196 -36.85926 -32.83445 -30.83666 -29.04798 -26.99494 -22.99649 -21.49208 -20.00815 -17.88213 -16.48007 -15.12085 -14.83323 -14.51005 -13.97601 -13.45831 -13.24026 -12.27524 -11.50452 -11.01206 -10.97509 -10.35937 -10.14622 -10.09899 -9.23665 -9.22195 -8.53484 -7.20176 -6.18670 -4.21626 2.24195 3.22514 3.29504 3.32443 3.36294 3.37849 4.26021 4.66340 5.18372 5.33895 5.72462 5.90444 6.22038 6.82532 7.03219 7.27935 7.63601 7.73844 7.97377 8.07757 8.61042 8.93867 9.43330 10.92685 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.131290 B = 0.010469 C = 0.009747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 213.217642 B = 2673.995277 C = 2872.069328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.069 0.931 9 C 0.199 3.801 10 O -0.312 6.312 11 C 0.003 3.997 12 C -0.001 4.001 13 N -0.285 5.285 14 N -0.482 5.482 15 H 0.438 0.562 16 C -0.014 4.014 17 H 0.267 0.733 18 H 0.017 0.983 19 H 0.016 0.984 20 H 0.186 0.814 21 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -8.369 0.003 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.087 0.913 9 C 0.126 3.874 10 O -0.225 6.225 11 C -0.052 4.052 12 C -0.188 4.188 13 N -0.110 5.110 14 N -0.198 5.198 15 H 0.282 0.718 16 C -0.158 4.158 17 H 0.076 0.924 18 H 0.034 0.966 19 H 0.034 0.966 20 H 0.203 0.797 21 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.158 -9.043 0.005 9.297 hybrid contribution 0.781 1.180 0.000 1.415 sum 2.939 -7.862 0.005 8.394 Atomic orbital electron populations 1.69941 1.06103 1.27582 1.49726 1.24929 0.95032 0.99461 0.94838 0.86322 0.79271 0.81554 0.78914 1.19916 1.21053 1.19921 1.20945 0.94194 0.88901 1.51967 0.91299 1.20508 0.88581 0.81840 0.96499 1.86069 1.37023 1.10095 1.89271 1.19051 0.90888 0.87801 1.07478 1.24217 0.97609 0.93163 1.03830 1.77098 1.00581 1.09732 1.23610 1.45864 1.03555 1.07982 1.62389 0.71812 1.21450 0.96202 0.86494 1.11662 0.92364 0.96561 0.96572 0.79683 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.42 14 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 14 3 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 14 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 14 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 14 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 14 7 C -0.52 -15.07 9.43 -34.44 -0.32 -15.39 14 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 14 9 C 0.20 5.37 4.84 36.00 0.17 5.54 14 10 O -0.31 -7.70 10.21 -20.45 -0.21 -7.91 14 11 C 0.00 0.07 6.96 -39.82 -0.28 -0.21 14 12 C 0.00 -0.02 11.07 -17.26 -0.19 -0.22 14 13 N -0.28 -5.15 12.69 30.68 0.39 -4.76 14 14 N -0.48 -7.09 7.40 30.67 0.23 -6.87 14 15 H 0.44 4.46 8.96 -182.62 -1.64 2.82 14 16 C -0.01 -0.24 12.04 -16.71 -0.20 -0.44 14 17 H 0.27 7.31 8.31 -40.82 -0.34 6.97 14 18 H 0.02 0.46 8.10 -51.93 -0.42 0.04 14 19 H 0.02 0.45 8.10 -51.93 -0.42 0.03 14 20 H 0.19 3.54 7.69 -52.49 -0.40 3.13 14 21 H 0.18 2.28 8.06 -52.49 -0.42 1.86 14 LS Contribution 201.28 15.07 3.03 3.03 Total: -1.00 -31.60 201.28 -4.61 -36.21 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -2.85 Total: -1.55 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.92 Total: -9.13 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 1.35 Total: -37.04 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.21 Total: -7.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -31.60 -4.61 -36.21 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260851134.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.885 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds