Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47551 * 240.00167 * 3 2 1 5 5 H 1.48501 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47095 * 120.00344 * 3 2 1 7 7 C 1.37882 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99375 * 359.97438 * 7 2 1 10 10 O 1.42908 * 109.47125 * 180.02562 * 9 7 2 11 11 C 1.36224 * 117.00133 * 179.97438 * 10 9 7 12 12 C 1.40117 * 126.05568 * 359.97169 * 11 10 9 13 13 N 1.30862 * 108.35598 * 180.02562 * 12 11 10 14 14 N 1.40074 * 108.32761 * 0.02562 * 13 12 11 15 15 H 0.96997 * 126.07985 * 179.97438 * 14 13 12 16 16 C 1.35596 * 126.05067 * 179.97438 * 11 10 9 17 17 H 0.97000 * 119.99603 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47596 * 60.00012 * 9 7 2 19 19 H 1.09007 * 109.47427 * 299.99696 * 9 7 2 20 20 H 1.07997 * 125.81831 * 0.06004 * 12 11 10 21 21 H 1.07995 * 126.20735 * 0.24589 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.6588 -4.8441 0.0000 12 6 0.2969 -5.1732 0.0011 13 7 0.1880 -6.4773 0.0019 14 7 1.4764 -7.0268 0.0019 15 1 1.6942 -7.9720 0.0027 16 6 2.3668 -6.0006 -0.0004 17 1 -0.4849 0.8401 0.0004 18 1 0.6240 -2.5567 -0.8903 19 1 0.6247 -2.5571 0.8897 20 1 -0.5231 -4.4704 0.0008 21 1 3.4431 -6.0897 0.0026 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260851134.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = 8.304999 kcal Electronic energy + Delta-G solvation = -9041.443963 eV Core-core repulsion = 7111.582410 eV Total energy + Delta-G solvation = -1929.861553 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.08803 -38.65385 -34.97726 -32.26431 -30.76369 -28.92665 -25.02174 -22.99729 -21.55926 -19.40416 -18.62302 -16.85343 -16.54986 -16.38405 -15.49530 -15.15009 -14.93781 -14.10171 -13.24054 -12.92101 -12.87339 -12.19867 -12.04767 -11.78359 -11.31079 -10.66401 -10.60511 -8.80778 -8.33514 -6.47001 0.83554 1.42772 1.47582 1.55881 1.81514 1.97617 2.34712 2.90943 3.01184 3.94063 4.23939 4.55596 4.68088 4.93893 5.09740 5.26860 5.56217 5.90029 6.39333 6.57078 6.67037 6.92417 7.25495 8.78588 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.131290 B = 0.010469 C = 0.009747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 213.217642 B = 2673.995277 C = 2872.069328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.067 0.933 9 C 0.216 3.784 10 O -0.328 6.328 11 C -0.060 4.060 12 C -0.015 4.015 13 N -0.295 5.295 14 N -0.452 5.452 15 H 0.462 0.538 16 C 0.031 3.969 17 H 0.273 0.727 18 H -0.003 1.003 19 H -0.004 1.004 20 H 0.176 0.824 21 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -8.877 0.004 9.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.086 0.914 9 C 0.142 3.858 10 O -0.241 6.241 11 C -0.115 4.115 12 C -0.201 4.201 13 N -0.121 5.121 14 N -0.170 5.170 15 H 0.311 0.689 16 C -0.115 4.115 17 H 0.081 0.919 18 H 0.014 0.986 19 H 0.014 0.986 20 H 0.193 0.807 21 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.580 -9.624 0.005 10.268 hybrid contribution 0.350 1.131 0.000 1.184 sum 3.930 -8.493 0.005 9.358 Atomic orbital electron populations 1.70057 1.07765 1.28952 1.49765 1.25963 0.96003 1.03364 0.93648 0.85173 0.78040 0.76381 0.79457 1.18896 1.20023 1.18903 1.21309 0.94410 0.90258 1.53253 0.91429 1.20058 0.88391 0.82785 0.94529 1.85968 1.36461 1.11174 1.90480 1.19520 0.92161 0.87475 1.12302 1.24127 0.97371 0.93808 1.04780 1.77071 1.02079 1.08765 1.24201 1.45981 1.02338 1.09142 1.59574 0.68898 1.22051 0.97861 0.84946 1.06621 0.91857 0.98564 0.98575 0.80686 0.76353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.96 13.29 21.45 0.28 -54.67 14 2 C 0.01 0.54 5.46 84.66 0.46 1.00 14 3 Si 0.99 43.56 29.54 68.60 2.03 45.58 14 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 14 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 14 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 14 7 C -0.55 -32.66 9.43 25.60 0.24 -32.41 14 8 H 0.07 3.88 7.81 -2.91 -0.02 3.86 14 9 C 0.22 12.17 4.84 71.23 0.34 12.51 14 10 O -0.33 -16.48 10.21 -96.10 -0.98 -17.46 14 11 C -0.06 -2.48 6.96 22.11 0.15 -2.33 14 12 C -0.02 -0.62 11.07 85.29 0.94 0.33 14 13 N -0.29 -10.29 12.69 -56.85 -0.72 -11.01 14 14 N -0.45 -11.88 7.40 -56.87 -0.42 -12.30 14 15 H 0.46 7.45 8.96 -213.34 -1.91 5.53 14 16 C 0.03 0.94 12.04 83.46 1.00 1.94 14 17 H 0.27 14.99 8.31 -92.71 -0.77 14.22 14 18 H 0.00 -0.20 8.10 -2.39 -0.02 -0.22 14 19 H 0.00 -0.21 8.10 -2.38 -0.02 -0.23 14 20 H 0.18 7.15 7.69 -2.91 -0.02 7.12 14 21 H 0.22 4.59 8.06 -2.91 -0.02 4.56 14 Total: -1.00 -68.54 201.28 2.67 -65.87 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -0.67 Total: 2.95 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 3.15 Total: -18.97 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -0.86 Total: -77.98 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.98 Total: -17.46 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.54 2.67 -65.87 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260851134.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.176 kcal (2) G-P(sol) polarization free energy of solvation -68.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds