Wall clock time and date at job start Mon Mar 30 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99923 * 2 1 4 4 H 1.48497 * 109.47034 * 269.99452 * 3 2 1 5 5 H 1.48499 * 109.47414 * 29.99726 * 3 2 1 6 6 H 1.48504 * 109.47152 * 149.99911 * 3 2 1 7 7 C 1.37879 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00329 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99614 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.77913 * 298.21273 * 9 7 2 11 11 C 1.54968 * 110.71660 * 61.45231 * 9 7 2 12 12 N 1.48625 * 103.29012 * 155.59258 * 11 9 7 13 13 C 1.47570 * 105.70986 * 321.14235 * 12 11 9 14 14 C 1.52653 * 120.79881 * 240.79031 * 13 12 11 15 15 C 1.52650 * 120.81722 * 169.36364 * 13 12 11 16 16 C 1.53676 * 107.46457 * 25.04679 * 13 12 11 17 17 H 0.97001 * 119.99774 * 0.02562 * 1 2 3 18 18 H 1.08994 * 110.65384 * 37.14118 * 11 9 7 19 19 H 1.08993 * 110.79705 * 274.10484 * 11 9 7 20 20 H 1.00901 * 111.00091 * 81.58793 * 12 11 9 21 21 H 1.09008 * 117.50664 * 357.23218 * 14 13 12 22 22 H 1.08998 * 117.51310 * 142.30197 * 14 13 12 23 23 H 1.08999 * 117.50301 * 217.66084 * 15 13 12 24 24 H 1.08998 * 117.50880 * 2.69880 * 15 13 12 25 25 H 1.09002 * 110.33724 * 240.04382 * 16 13 12 26 26 H 1.08996 * 110.34271 * 117.79154 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6401 -2.5930 0.8983 11 6 0.3775 -2.6279 -1.2730 12 7 0.2164 -4.0970 -1.4298 13 6 1.5213 -4.6830 -1.0674 14 6 2.3197 -5.4998 -2.0802 15 6 1.6758 -6.1895 -0.8750 16 6 2.2256 -3.6938 -0.1256 17 1 -0.4850 0.8401 -0.0004 18 1 0.8907 -2.2031 -2.1357 19 1 -0.5905 -2.1483 -1.1285 20 1 -0.5160 -4.4465 -0.8302 21 1 1.8684 -5.6695 -3.0579 22 1 3.4038 -5.3867 -2.0758 23 1 2.3363 -6.5300 -0.0776 24 1 0.8008 -6.8128 -1.0592 25 1 3.1714 -3.3671 -0.5578 26 1 2.3918 -4.1518 0.8495 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260940884.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:10 Heat of formation + Delta-G solvation = 17.610693 kcal Electronic energy + Delta-G solvation = -9551.677462 eV Core-core repulsion = 7823.478439 eV Total energy + Delta-G solvation = -1728.199022 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.37195 -34.18020 -32.02447 -29.18857 -25.61488 -23.76004 -22.00474 -19.75730 -18.55248 -16.37416 -15.43676 -14.45393 -14.37288 -13.22779 -12.95283 -12.39014 -11.83229 -11.30630 -11.02745 -10.95963 -10.75713 -10.49474 -10.38039 -9.78485 -9.29011 -9.08491 -8.95144 -8.47169 -7.60520 -6.04800 -4.06990 3.29970 3.36541 3.39686 4.32982 4.41838 4.86688 5.27195 5.33997 5.48780 5.98159 6.01107 6.15945 6.28766 6.48754 6.53547 6.60570 6.89276 6.99856 7.18210 7.50417 7.65694 7.82616 7.94395 8.27146 8.40946 8.94224 9.56750 11.05094 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.091948 B = 0.013422 C = 0.012562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.446812 B = 2085.687101 C = 2228.387570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.022 3.978 10 H 0.028 0.972 11 C 0.065 3.935 12 N -0.660 5.660 13 C 0.039 3.961 14 C -0.163 4.163 15 C -0.186 4.186 16 C -0.105 4.105 17 H 0.261 0.739 18 H 0.063 0.937 19 H 0.077 0.923 20 H 0.326 0.674 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -6.674 -1.225 7.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.003 3.997 10 H 0.046 0.954 11 C -0.063 4.063 12 N -0.287 5.287 13 C -0.053 4.053 14 C -0.201 4.201 15 C -0.224 4.224 16 C -0.144 4.144 17 H 0.071 0.929 18 H 0.081 0.919 19 H 0.096 0.904 20 H 0.142 0.858 21 H 0.109 0.891 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.995 -6.569 -1.967 7.141 hybrid contribution 0.466 1.042 0.953 1.487 sum 2.462 -5.526 -1.014 6.134 Atomic orbital electron populations 1.69937 1.05906 1.26645 1.50527 1.24997 0.94906 0.99163 0.94943 0.86572 0.79819 0.83353 0.78146 1.20606 1.21226 1.19950 1.21083 0.92776 0.90190 1.50945 0.92573 1.20113 0.92956 0.92034 0.94626 0.95385 1.23124 1.01179 0.83368 0.98620 1.62424 1.03005 1.08207 1.55096 1.22125 0.93560 0.90753 0.98855 1.22937 0.98447 1.04179 0.94531 1.23043 1.02994 0.95564 1.00772 1.22328 0.99896 0.95971 0.96233 0.92940 0.91875 0.90413 0.85799 0.89050 0.89357 0.89355 0.89253 0.91994 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 12.05 55.43 0.67 -24.88 15 2 C 0.06 1.71 5.33 -17.82 -0.10 1.62 15 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.51 -14.20 8.51 -34.43 -0.29 -14.50 15 8 H 0.06 1.54 7.59 -52.49 -0.40 1.15 15 9 C 0.02 0.57 2.99 -89.84 -0.27 0.30 15 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 11 C 0.07 1.59 6.26 -1.83 -0.01 1.58 15 12 N -0.66 -13.75 7.51 -97.13 -0.73 -14.48 15 13 C 0.04 0.76 2.90 -131.24 -0.38 0.38 15 14 C -0.16 -2.72 10.39 -26.87 -0.28 -3.00 15 15 C -0.19 -2.93 10.39 -26.88 -0.28 -3.21 15 16 C -0.11 -2.29 6.22 -25.49 -0.16 -2.45 15 17 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 18 H 0.06 1.64 8.04 -51.93 -0.42 1.22 15 19 H 0.08 2.01 7.43 -51.93 -0.39 1.62 15 20 H 0.33 6.32 8.92 -39.29 -0.35 5.97 15 21 H 0.09 1.49 8.14 -51.92 -0.42 1.07 15 22 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 23 H 0.09 1.28 8.14 -51.93 -0.42 0.85 15 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.06 1.36 7.70 -51.93 -0.40 0.96 15 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 220.24 15.07 3.32 3.32 Total: -1.00 -28.17 220.24 -7.15 -35.33 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.62 Total: 3.65 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.77 Total: -19.27 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.06 Total: -39.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.17 -7.15 -35.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940884.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.937 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds