Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48496 * 109.47153 * 89.99943 * 3 2 1 5 5 H 1.48501 * 109.47320 * 209.99967 * 3 2 1 6 6 H 1.48504 * 109.47072 * 329.99556 * 3 2 1 7 7 C 1.38814 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00357 * 168.81877 * 7 2 1 9 9 N 1.36940 * 119.99613 * 348.81518 * 7 2 1 10 10 C 1.47660 * 121.53457 * 155.76889 * 9 7 2 11 11 C 1.54478 * 106.89109 * 140.19787 * 10 9 7 12 12 C 1.54087 * 110.90591 * 66.68639 * 11 10 9 13 13 C 1.54093 * 86.07911 * 279.24024 * 12 11 10 14 14 C 1.54274 * 85.75725 * 329.99462 * 13 12 11 15 15 C 1.47653 * 121.53637 * 336.05276 * 9 7 2 16 16 H 0.96993 * 119.99988 * 0.02562 * 1 2 3 17 17 H 1.09000 * 109.93185 * 259.67557 * 10 9 7 18 18 H 1.08994 * 109.93336 * 20.89534 * 10 9 7 19 19 H 1.08992 * 114.77475 * 199.93300 * 11 10 9 20 20 H 1.09005 * 113.77070 * 164.95055 * 12 11 10 21 21 H 1.08999 * 113.88233 * 33.55222 * 12 11 10 22 22 H 1.08995 * 115.56845 * 213.03568 * 13 12 11 23 23 H 1.09006 * 113.79252 * 144.22702 * 14 13 12 24 24 H 1.08992 * 113.80060 * 275.70989 * 14 13 12 25 25 H 1.09000 * 109.93885 * 339.10888 * 15 9 7 26 26 H 1.09005 * 109.93146 * 100.24207 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0749 -1.2111 -0.1808 9 7 1.3451 -2.3767 0.2311 10 6 1.8677 -3.6687 -0.2566 11 6 1.6108 -4.7065 0.8585 12 6 0.1008 -4.9481 1.0474 13 6 0.1055 -3.6530 1.8823 14 6 1.5586 -4.0260 2.2421 15 6 0.0692 -2.4087 0.9735 16 1 -0.4850 0.8400 -0.0004 17 1 1.3453 -3.9608 -1.1676 18 1 2.9373 -3.5878 -0.4500 19 1 2.2269 -5.6036 0.7983 20 1 -0.1321 -5.8426 1.6253 21 1 -0.4766 -4.8749 0.1258 22 1 -0.6015 -3.6251 2.7114 23 1 2.2230 -3.1668 2.3350 24 1 1.6403 -4.7212 3.0775 25 1 -0.0307 -1.5085 1.5799 26 1 -0.7650 -2.4809 0.2756 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950860.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = 48.484208 kcal Electronic energy + Delta-G solvation = -9897.347749 eV Core-core repulsion = 8170.487502 eV Total energy + Delta-G solvation = -1726.860246 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.41457 -33.74073 -30.56389 -28.59471 -25.43753 -24.77606 -21.48454 -21.23311 -17.26601 -16.70753 -15.10779 -14.35343 -13.81397 -13.12076 -12.94484 -12.64154 -11.90090 -11.29842 -11.08794 -10.75947 -10.68993 -10.27930 -10.00465 -9.88930 -9.55849 -9.22883 -9.06881 -8.44140 -6.66216 -5.71884 -3.12299 3.41306 3.47099 3.48717 4.53340 5.29822 5.38745 5.42975 5.51262 5.59876 5.77363 6.16216 6.25275 6.35331 6.51844 6.56341 6.64975 6.88020 6.92194 7.05005 7.24562 7.49303 7.71462 7.85381 8.44307 9.26314 9.88478 10.48699 11.38221 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.086021 B = 0.016295 C = 0.015391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.425470 B = 1717.917687 C = 1818.787736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.003 4.003 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.068 0.932 9 N -0.598 5.598 10 C 0.158 3.842 11 C -0.128 4.128 12 C -0.139 4.139 13 C -0.138 4.138 14 C -0.124 4.124 15 C 0.196 3.804 16 H 0.253 0.747 17 H 0.020 0.980 18 H 0.049 0.951 19 H 0.069 0.931 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -6.442 2.679 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.200 4.200 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.323 5.323 10 C 0.032 3.968 11 C -0.148 4.148 12 C -0.176 4.176 13 C -0.157 4.157 14 C -0.162 4.162 15 C 0.070 3.930 16 H 0.063 0.937 17 H 0.037 0.963 18 H 0.068 0.932 19 H 0.087 0.913 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.266 -6.264 2.652 6.919 hybrid contribution 0.325 0.806 -0.026 0.870 sum 1.591 -5.457 2.626 6.262 Atomic orbital electron populations 1.69992 1.05134 1.25282 1.55414 1.25026 0.95480 0.98170 1.01341 0.86212 0.78875 0.83607 0.77611 1.21532 1.20541 1.21751 1.19207 0.91139 0.83880 1.43140 0.91404 1.44478 1.24282 1.01579 1.61937 1.21119 0.97158 0.85912 0.92643 1.23253 0.96058 0.98204 0.97283 1.23189 0.96911 0.97524 0.99991 1.23528 0.96418 0.97114 0.98665 1.22893 0.98190 0.99978 0.95125 1.20894 0.87241 0.93144 0.91687 0.93696 0.96273 0.93220 0.91308 0.91877 0.92210 0.91445 0.90577 0.92345 0.90359 0.95554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.17 10.90 55.49 0.60 -26.56 15 2 C 0.00 -0.07 5.13 -17.43 -0.09 -0.16 15 3 Si 0.91 22.22 29.57 -169.99 -5.03 17.19 15 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 7 C -0.24 -6.92 9.80 -15.06 -0.15 -7.07 15 8 H 0.07 1.88 7.85 -52.49 -0.41 1.46 15 9 N -0.60 -15.68 2.38 -169.77 -0.40 -16.08 15 10 C 0.16 3.49 6.57 -2.63 -0.02 3.47 15 11 C -0.13 -2.42 5.08 -88.64 -0.45 -2.87 15 12 C -0.14 -2.52 7.27 -25.67 -0.19 -2.71 15 13 C -0.14 -2.80 5.07 -88.82 -0.45 -3.25 15 14 C -0.12 -2.40 7.23 -25.47 -0.18 -2.58 15 15 C 0.20 4.92 4.89 -2.82 -0.01 4.90 15 16 H 0.25 7.27 8.31 -40.82 -0.34 6.93 15 17 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 18 H 0.05 1.06 8.04 -51.93 -0.42 0.64 15 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 20 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.06 1.13 8.08 -51.93 -0.42 0.71 15 22 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.08 1.66 7.61 -51.93 -0.39 1.26 15 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.08 2.17 6.57 -51.93 -0.34 1.83 15 26 H 0.03 0.71 8.13 -51.93 -0.42 0.29 15 LS Contribution 210.50 15.07 3.17 3.17 Total: -1.00 -29.59 210.50 -6.85 -36.44 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -3.66 Total: -3.90 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.54 Total: -10.26 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.20 Total: -42.64 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -29.59 -6.85 -36.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950860.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.926 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds