Wall clock time and date at job start Mon Mar 30 2020 02:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 N 1.33327 * 126.54634 * 60.02290 * 12 2 1 14 14 N 1.28990 * 107.35299 * 180.02562 * 13 12 2 15 15 N 1.28786 * 108.72918 * 359.97438 * 14 13 12 16 16 H 0.97001 * 125.45436 * 179.97438 * 15 14 13 17 17 N 1.28883 * 109.09910 * 359.73291 * 15 14 13 18 18 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 19 19 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 21 21 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 7 1.7926 -1.9774 1.5692 14 7 2.3980 -2.1980 2.6866 15 7 3.0014 -1.1198 3.0500 16 1 3.5308 -1.0157 3.8561 17 7 2.7934 -0.2027 2.1687 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.9026 -0.5282 -4.4376 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260969572.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:01 Heat of formation + Delta-G solvation = 120.671609 kcal Electronic energy + Delta-G solvation = -9400.910166 eV Core-core repulsion = 7508.213946 eV Total energy + Delta-G solvation = -1892.696220 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -43.72875 -35.16189 -33.32394 -32.18953 -30.55108 -25.18737 -23.81002 -23.62331 -20.32924 -18.34709 -16.69537 -16.23007 -15.01644 -14.03701 -13.11636 -12.86408 -12.26377 -11.70717 -11.63627 -11.14443 -10.76464 -10.54063 -10.33691 -10.11031 -9.71400 -9.49732 -9.03909 -8.60362 -6.11161 -4.12823 1.77884 2.92344 2.97702 3.26546 3.35499 3.38379 4.36143 4.78529 5.10537 5.31284 6.12132 6.28437 6.28942 6.52771 6.67739 6.81841 7.04354 7.29121 7.56055 8.42176 8.91413 8.98835 9.46049 11.01615 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.082419 B = 0.015741 C = 0.014621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.647442 B = 1778.389466 C = 1914.651614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.097 3.903 3 H 0.057 0.943 4 C -0.511 4.511 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.275 1.275 10 H -0.264 1.264 11 H -0.295 1.295 12 C 0.229 3.771 13 N -0.266 5.266 14 N -0.077 5.077 15 N -0.250 5.250 16 H 0.464 0.536 17 N -0.325 5.325 18 H 0.051 0.949 19 H 0.065 0.935 20 H 0.031 0.969 21 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 2.895 9.887 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.075 3.925 3 H 0.075 0.925 4 C -0.550 4.550 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.202 1.202 10 H -0.189 1.189 11 H -0.222 1.222 12 C -0.054 4.054 13 N -0.139 5.139 14 N -0.073 5.073 15 N -0.094 5.094 16 H 0.316 0.684 17 N -0.176 5.176 18 H 0.069 0.931 19 H 0.084 0.916 20 H 0.050 0.950 21 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.706 2.385 10.052 10.355 hybrid contribution -0.184 1.148 -0.005 1.162 sum -0.890 3.532 10.047 10.687 Atomic orbital electron populations 1.22133 0.96921 1.02065 0.99115 1.17809 0.92479 0.95667 0.86517 0.92544 1.20721 1.32904 1.13798 0.87555 0.90352 1.24904 0.95592 0.96710 0.95489 1.69874 1.45084 1.40117 0.97977 0.86866 0.80731 0.83519 0.77267 1.20194 1.18894 1.22215 1.26200 0.93519 0.89024 0.96616 1.75872 1.18418 1.15637 1.03995 1.78852 1.07447 1.11401 1.09588 1.47683 1.36004 1.05796 1.19920 0.68378 1.74736 1.21252 1.19221 1.02404 0.93068 0.91628 0.94971 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.66 37.16 0.32 -2.81 14 2 C 0.10 2.34 2.36 -92.92 -0.22 2.12 14 3 H 0.06 1.34 7.20 -51.93 -0.37 0.96 14 4 C -0.51 -14.42 9.13 -34.44 -0.31 -14.73 14 5 H 0.08 2.46 7.98 -52.49 -0.42 2.04 14 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 14 7 N -0.89 -27.02 13.96 55.43 0.77 -26.24 14 8 Si 0.89 21.18 24.37 -169.99 -4.14 17.04 14 9 H -0.28 -6.36 6.87 56.52 0.39 -5.98 14 10 H -0.26 -5.95 6.53 56.52 0.37 -5.58 14 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 14 12 C 0.23 5.13 6.81 -156.62 -1.07 4.06 14 13 N -0.27 -5.95 12.50 32.45 0.41 -5.55 14 14 N -0.08 -1.44 13.48 60.35 0.81 -0.63 14 15 N -0.25 -3.91 7.91 60.34 0.48 -3.44 14 16 H 0.46 4.52 8.96 -340.52 -3.05 1.47 14 17 N -0.33 -6.32 12.36 32.47 0.40 -5.92 14 18 H 0.05 1.12 3.27 -51.93 -0.17 0.95 14 19 H 0.06 1.43 8.14 -51.93 -0.42 1.01 14 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 14 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 14 LS Contribution 189.51 15.07 2.86 2.86 Total: -1.00 -31.78 189.51 -3.83 -35.62 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -4.04 Total: -4.43 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.38 Total: -9.31 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 2.87 Total: -41.77 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.04 kcal Total LS contribution 2.86 Total: 2.86 kcal Total: -31.78 -3.83 -35.62 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969572.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.287 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds