Wall clock time and date at job start Mon Mar 30 2020 02:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 N 1.33327 * 126.54634 * 60.02290 * 12 2 1 14 14 N 1.28990 * 107.35299 * 180.02562 * 13 12 2 15 15 N 1.28786 * 108.72918 * 359.97438 * 14 13 12 16 16 H 0.97001 * 125.45436 * 179.97438 * 15 14 13 17 17 N 1.28883 * 109.09910 * 359.73291 * 15 14 13 18 18 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 19 19 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 21 21 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 7 1.7926 -1.9774 1.5692 14 7 2.3980 -2.1980 2.6866 15 7 3.0014 -1.1198 3.0500 16 1 3.5308 -1.0157 3.8561 17 7 2.7934 -0.2027 2.1687 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.9026 -0.5282 -4.4376 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260969572.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:01 Heat of formation + Delta-G solvation = 95.367718 kcal Electronic energy + Delta-G solvation = -9402.007425 eV Core-core repulsion = 7508.213946 eV Total energy + Delta-G solvation = -1893.793479 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.28723 -36.98281 -34.93941 -34.11423 -32.34211 -27.16335 -25.40701 -25.34932 -22.08035 -19.92196 -18.66052 -17.86722 -16.93753 -15.81619 -14.97808 -14.62638 -14.09249 -13.44321 -13.34295 -12.94860 -12.60288 -12.13752 -11.98833 -11.89959 -11.48664 -11.38147 -10.91638 -10.69305 -8.27913 -6.35918 0.26727 1.27362 1.39879 1.45001 1.55812 1.67760 2.36540 3.05495 3.13738 3.58860 4.38976 4.60047 4.67166 4.74741 4.98118 5.04973 5.50289 5.55771 5.83324 6.23910 6.66902 7.27389 7.40604 8.89023 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.082419 B = 0.015741 C = 0.014621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.647442 B = 1778.389466 C = 1914.651614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.097 3.903 3 H 0.065 0.935 4 C -0.518 4.518 5 H 0.027 0.973 6 C 0.018 3.982 7 N -0.946 5.946 8 Si 0.952 3.048 9 H -0.259 1.259 10 H -0.236 1.236 11 H -0.296 1.296 12 C 0.206 3.794 13 N -0.303 5.303 14 N -0.071 5.071 15 N -0.210 5.210 16 H 0.490 0.510 17 N -0.317 5.317 18 H 0.051 0.949 19 H 0.055 0.945 20 H 0.065 0.935 21 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 4.524 11.474 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.075 3.925 3 H 0.083 0.917 4 C -0.557 4.557 5 H 0.045 0.955 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.777 3.223 9 H -0.185 1.185 10 H -0.159 1.159 11 H -0.224 1.224 12 C -0.077 4.077 13 N -0.175 5.175 14 N -0.066 5.066 15 N -0.060 5.060 16 H 0.348 0.652 17 N -0.169 5.169 18 H 0.069 0.931 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.471 3.999 11.693 12.446 hybrid contribution 0.205 0.545 -0.376 0.693 sum -1.266 4.545 11.318 12.261 Atomic orbital electron populations 1.22039 0.94966 1.02051 1.00707 1.17674 0.94079 0.95434 0.85327 0.91708 1.20863 1.32249 1.12541 0.90016 0.95484 1.25853 0.97050 1.00356 0.94743 1.70035 1.47152 1.42516 0.98783 0.85800 0.79108 0.79319 0.78032 1.18510 1.15895 1.22396 1.25922 0.95089 0.89378 0.97267 1.75850 1.20144 1.16073 1.05448 1.78773 1.07361 1.11797 1.08665 1.47709 1.34250 1.04322 1.19766 0.65164 1.74660 1.20291 1.19671 1.02320 0.93062 0.92605 0.91578 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 8.66 71.98 0.62 -5.10 14 2 C 0.10 4.52 2.36 -12.29 -0.03 4.49 14 3 H 0.07 2.90 7.20 -2.39 -0.02 2.89 14 4 C -0.52 -29.74 9.13 25.60 0.23 -29.51 14 5 H 0.03 1.77 7.98 -2.91 -0.02 1.75 14 6 C 0.02 1.02 5.45 84.66 0.46 1.48 14 7 N -0.95 -58.71 13.96 21.45 0.30 -58.41 14 8 Si 0.95 42.60 24.37 68.60 1.67 44.28 14 9 H -0.26 -10.92 6.87 99.48 0.68 -10.23 14 10 H -0.24 -9.42 6.53 99.48 0.65 -8.77 14 11 H -0.30 -13.26 7.11 99.48 0.71 -12.55 14 12 C 0.21 8.99 6.81 138.55 0.94 9.93 14 13 N -0.30 -13.34 12.50 -51.26 -0.64 -13.98 14 14 N -0.07 -2.51 13.48 37.02 0.50 -2.01 14 15 N -0.21 -5.99 7.91 37.00 0.29 -5.69 14 16 H 0.49 7.79 8.96 -347.67 -3.12 4.67 14 17 N -0.32 -11.56 12.36 -51.20 -0.63 -12.19 14 18 H 0.05 2.08 3.27 -2.39 -0.01 2.07 14 19 H 0.05 2.36 8.14 -2.39 -0.02 2.34 14 20 H 0.07 2.24 8.14 -2.39 -0.02 2.23 14 21 H 0.27 15.53 8.31 -92.70 -0.77 14.76 14 Total: -1.00 -69.36 189.51 1.79 -67.57 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -1.93 Total: -0.86 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 2.23 Total: -18.70 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -0.18 Total: -92.29 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.67 Total: 44.28 kcal Total: -69.36 1.79 -67.57 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969572.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.941 kcal (2) G-P(sol) polarization free energy of solvation -69.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds