Wall clock time and date at job start Mon Mar 30 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47084 * 2 1 4 4 C 1.50699 * 109.47726 * 239.99911 * 2 1 3 5 5 H 1.07991 * 120.00387 * 240.00309 * 4 2 1 6 6 C 1.37883 * 119.99753 * 59.99840 * 4 2 1 7 7 N 1.31514 * 120.00032 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99943 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47165 * 59.99955 * 8 6 4 10 10 H 1.48499 * 109.46961 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47245 * 300.00048 * 8 6 4 12 12 N 1.46500 * 109.47145 * 119.99747 * 2 1 3 13 13 C 1.35312 * 125.86582 * 34.99980 * 12 2 1 14 14 C 1.35359 * 106.17441 * 179.77310 * 13 12 2 15 15 N 1.33772 * 106.49554 * 0.22938 * 14 13 12 16 16 N 1.28640 * 108.88426 * 359.97438 * 15 14 13 17 17 H 1.09000 * 109.47296 * 300.00024 * 1 2 3 18 18 H 1.09004 * 109.46990 * 60.00151 * 1 2 3 19 19 H 1.09001 * 109.47084 * 179.97438 * 1 2 3 20 20 H 0.96996 * 120.00122 * 179.97438 * 7 6 4 21 21 H 1.08002 * 126.91567 * 0.04325 * 13 12 2 22 22 H 1.07994 * 126.74727 * 180.21281 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3216 -1.1203 -4.0079 9 1 1.8262 -2.5202 -4.0077 10 1 1.8262 -0.4205 -5.2204 11 1 3.8066 -1.1208 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 1.4357 -1.7586 1.7884 14 6 2.2155 -2.0737 2.8489 15 7 3.2210 -1.1914 2.8565 16 7 3.0738 -0.3839 1.8660 17 1 -0.3634 0.5138 0.8900 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 0.7088 1.1612 -3.4844 21 1 0.5328 -2.2616 1.4751 22 1 2.0570 -2.8789 3.5510 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973804.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:11 Heat of formation + Delta-G solvation = 87.993961 kcal Electronic energy + Delta-G solvation = -9328.762203 eV Core-core repulsion = 7500.074885 eV Total energy + Delta-G solvation = -1828.687318 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.27311 -35.25105 -32.39318 -30.23961 -29.19115 -25.60263 -23.03006 -21.60257 -20.05672 -17.11943 -16.33047 -14.98983 -14.62538 -14.19334 -13.21443 -12.87469 -12.12111 -11.38928 -11.24871 -11.06919 -10.85479 -10.52934 -10.45127 -10.05495 -9.94671 -8.86273 -8.74926 -8.54034 -6.40099 -4.50938 2.61980 3.15803 3.20223 3.23660 3.36693 3.61629 4.19148 4.92265 5.34203 5.69376 6.00642 6.11678 6.34154 6.46525 6.68958 6.89624 7.12360 7.40532 7.51760 7.70595 7.79437 8.52247 9.17268 9.44744 10.65741 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.073943 B = 0.015269 C = 0.014045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.579979 B = 1833.378620 C = 1993.049466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.259 3.741 3 H 0.072 0.928 4 C -0.538 4.538 5 H 0.066 0.934 6 C 0.072 3.928 7 N -0.885 5.885 8 Si 0.912 3.088 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.246 5.246 13 C -0.049 4.049 14 C -0.079 4.079 15 N -0.305 5.305 16 N -0.098 5.098 17 H 0.023 0.977 18 H 0.110 0.890 19 H 0.043 0.957 20 H 0.271 0.729 21 H 0.178 0.822 22 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 -3.648 2.520 5.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.161 3.839 3 H 0.089 0.911 4 C -0.576 4.576 5 H 0.084 0.916 6 C -0.132 4.132 7 N -0.522 5.522 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.040 5.040 13 C -0.203 4.203 14 C -0.239 4.239 15 N -0.169 5.169 16 N -0.077 5.077 17 H 0.043 0.957 18 H 0.128 0.872 19 H 0.062 0.938 20 H 0.081 0.919 21 H 0.195 0.805 22 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.696 -2.510 2.460 3.902 hybrid contribution -0.786 -1.213 -1.056 1.790 sum -2.482 -3.723 1.404 4.689 Atomic orbital electron populations 1.22168 0.95360 1.01040 1.02399 1.19694 0.92615 0.94057 0.77568 0.91075 1.21109 1.33509 1.13796 0.89233 0.91629 1.24869 0.94337 0.94855 0.99185 1.69821 1.35339 1.22204 1.24852 0.86311 0.79492 0.79552 0.80788 1.19870 1.20785 1.19812 1.48350 1.15247 1.19816 1.20595 1.23463 1.03702 0.95335 0.97779 1.23389 0.95442 1.03567 1.01477 1.74962 1.22375 1.04686 1.14891 1.78159 1.05485 1.21491 1.02603 0.95747 0.87188 0.93814 0.91931 0.80511 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.61 37.16 0.32 -2.94 14 2 C 0.26 6.30 3.23 -69.08 -0.22 6.08 14 3 H 0.07 1.87 8.14 -51.93 -0.42 1.45 14 4 C -0.54 -14.11 8.84 -34.44 -0.30 -14.42 14 5 H 0.07 1.78 7.81 -52.49 -0.41 1.37 14 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 14 7 N -0.89 -23.08 11.32 55.43 0.63 -22.45 14 8 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 14 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 14 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 14 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 14 12 N -0.25 -5.70 3.24 -55.89 -0.18 -5.88 14 13 C -0.05 -0.96 10.69 -17.04 -0.18 -1.14 14 14 C -0.08 -1.49 12.05 -17.73 -0.21 -1.71 14 15 N -0.31 -6.86 12.41 30.24 0.38 -6.48 14 16 N -0.10 -2.38 13.17 60.35 0.79 -1.58 14 17 H 0.02 0.47 8.14 -51.93 -0.42 0.05 14 18 H 0.11 2.57 6.07 -51.93 -0.32 2.25 14 19 H 0.04 0.87 7.17 -51.93 -0.37 0.50 14 20 H 0.27 6.70 8.31 -40.82 -0.34 6.36 14 21 H 0.18 2.87 7.30 -52.49 -0.38 2.49 14 22 H 0.18 2.49 8.06 -52.49 -0.42 2.06 14 LS Contribution 200.71 15.07 3.02 3.02 Total: -1.00 -28.10 200.71 -2.96 -31.07 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -1.88 Total: -0.48 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.70 Total: -12.38 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 1.62 Total: -36.40 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -28.10 -2.96 -31.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973804.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.061 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds