Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34306 * 127.07719 * 2 1 4 4 N 1.21161 * 109.77604 * 180.29280 * 3 2 1 5 5 N 1.28649 * 111.52036 * 359.75245 * 4 3 2 6 6 C 1.34513 * 107.93045 * 359.97438 * 5 4 3 7 7 C 1.50700 * 127.53798 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 90.02630 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 H 1.09000 * 109.47363 * 270.11250 * 1 2 3 17 17 H 1.08998 * 109.47158 * 30.12091 * 1 2 3 18 18 H 1.09009 * 109.47364 * 150.11768 * 1 2 3 19 19 H 1.09004 * 109.47210 * 330.02923 * 7 6 5 20 20 H 1.08994 * 109.47551 * 210.02575 * 7 6 5 21 21 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3167 1.0715 0.0000 4 7 3.4735 0.7112 -0.0058 5 7 3.5682 -0.5718 -0.0050 6 6 2.3224 -1.0790 0.0028 7 6 1.9225 -2.5319 0.0061 8 6 1.7971 -3.0151 1.4281 9 1 1.9874 -2.3377 2.2474 10 6 1.4332 -4.3204 1.6831 11 7 1.2010 -5.1452 0.6854 12 14 1.2703 -4.9171 3.4457 13 1 0.2372 -4.1132 4.1470 14 1 0.8715 -6.3476 3.4491 15 1 2.5729 -4.7652 4.1423 16 1 -0.3634 0.0020 1.0276 17 1 -0.3633 0.8889 -0.5157 18 1 -0.3634 -0.8911 -0.5120 19 1 2.6813 -3.1188 -0.5114 20 1 0.9652 -2.6466 -0.5023 21 1 0.9454 -6.0635 0.8649 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975221.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = 41.422009 kcal Electronic energy + Delta-G solvation = -9271.808112 eV Core-core repulsion = 7343.382620 eV Total energy + Delta-G solvation = -1928.425492 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -46.49260 -37.30833 -35.48014 -34.38302 -30.84224 -28.75767 -26.13460 -23.96757 -22.83890 -19.33500 -18.48392 -18.19723 -16.61102 -15.60714 -15.05278 -14.50948 -14.00761 -13.91625 -13.36844 -13.10373 -12.95646 -12.64031 -12.53874 -12.22532 -11.93179 -11.59328 -10.61933 -10.18685 -8.24451 -6.36707 0.02793 1.12163 1.43551 1.45738 1.53839 1.78040 2.41409 3.08652 3.46919 3.66207 3.85768 4.39190 4.74246 4.76908 4.88826 5.14219 5.30538 5.38827 5.67163 6.05343 6.70091 7.31689 7.35341 8.85925 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.070183 B = 0.013573 C = 0.013242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.860527 B = 2062.479267 C = 2113.971370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.049 4.049 3 O 0.092 5.908 4 N -0.191 5.191 5 N -0.296 5.296 6 C -0.009 4.009 7 C 0.105 3.895 8 C -0.535 4.535 9 H 0.049 0.951 10 C 0.017 3.983 11 N -0.921 5.921 12 Si 0.964 3.036 13 H -0.261 1.261 14 H -0.278 1.278 15 H -0.278 1.278 16 H 0.103 0.897 17 H 0.116 0.884 18 H 0.100 0.900 19 H 0.011 0.989 20 H 0.050 0.950 21 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 7.608 0.041 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 O 0.033 5.967 4 N -0.041 5.041 5 N -0.181 5.181 6 C -0.139 4.139 7 C 0.067 3.933 8 C -0.574 4.574 9 H 0.067 0.933 10 C -0.182 4.182 11 N -0.560 5.560 12 Si 0.789 3.211 13 H -0.185 1.185 14 H -0.203 1.203 15 H -0.204 1.204 16 H 0.121 0.879 17 H 0.135 0.865 18 H 0.118 0.882 19 H 0.030 0.970 20 H 0.068 0.932 21 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.658 7.932 -0.022 8.735 hybrid contribution -0.530 -0.766 0.703 1.168 sum -4.188 7.165 0.681 8.328 Atomic orbital electron populations 1.20583 0.79211 1.06242 1.05777 1.25823 0.98792 0.82453 1.04894 1.84876 1.13299 1.35705 1.62864 1.78521 0.98638 1.08725 1.18168 1.75615 1.25765 1.00634 1.16098 1.23684 0.87555 1.00777 1.01863 1.17513 0.96729 0.81448 0.97614 1.21118 1.48030 0.96581 0.91622 0.93253 1.25760 0.94341 0.96438 1.01709 1.70025 1.46771 1.06200 1.33015 0.85511 0.78745 0.77562 0.79313 1.18530 1.20303 1.20392 0.87860 0.86505 0.88166 0.97034 0.93184 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.45 10.30 71.24 0.73 -0.72 14 2 C -0.05 -1.72 7.54 24.99 0.19 -1.53 14 3 O 0.09 3.30 11.33 68.80 0.78 4.08 14 4 N -0.19 -8.00 13.28 36.52 0.49 -7.52 14 5 N -0.30 -14.03 12.50 -48.28 -0.60 -14.64 14 6 C -0.01 -0.41 6.54 41.46 0.27 -0.14 14 7 C 0.11 5.36 5.39 29.10 0.16 5.52 14 8 C -0.54 -29.27 9.09 25.60 0.23 -29.03 14 9 H 0.05 2.70 7.74 -2.91 -0.02 2.68 14 10 C 0.02 0.94 5.46 84.66 0.46 1.40 14 11 N -0.92 -52.24 13.29 21.45 0.28 -51.96 14 12 Si 0.96 42.37 29.54 68.60 2.03 44.39 14 13 H -0.26 -10.80 7.11 99.48 0.71 -10.09 14 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 14 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 14 16 H 0.10 2.28 8.14 -2.39 -0.02 2.26 14 17 H 0.12 1.87 8.14 -2.39 -0.02 1.85 14 18 H 0.10 2.47 7.41 -2.38 -0.02 2.45 14 19 H 0.01 0.64 8.14 -2.38 -0.02 0.62 14 20 H 0.05 2.46 7.41 -2.39 -0.02 2.44 14 21 H 0.27 14.35 8.31 -92.70 -0.77 13.58 14 Total: -1.00 -63.30 200.87 6.25 -57.04 By element: Atomic # 1 Polarization: -8.13 SS G_CDS: 1.23 Total: -6.90 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 2.04 Total: -24.51 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: 0.17 Total: -74.11 kcal Atomic # 8 Polarization: 3.30 SS G_CDS: 0.78 Total: 4.08 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -63.30 6.25 -57.04 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975221.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.466 kcal (2) G-P(sol) polarization free energy of solvation -63.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds