Wall clock time and date at job start Mon Mar 30 2020 02:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48559 * 111.00176 * 2 1 4 4 C 1.54381 * 104.59426 * 200.96061 * 3 2 1 5 5 H 1.08994 * 118.15477 * 244.14378 * 4 3 2 6 6 C 1.53004 * 118.12733 * 87.22868 * 4 3 2 7 7 H 1.08995 * 117.40950 * 15.98938 * 6 4 3 8 8 C 1.50699 * 117.44185 * 160.68880 * 6 4 3 9 9 H 1.08002 * 120.00516 * 69.22054 * 8 6 4 10 10 C 1.37884 * 119.99783 * 249.22354 * 8 6 4 11 11 N 1.31514 * 119.99707 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 119.99956 * 180.27458 * 10 8 6 13 13 H 1.48503 * 109.47407 * 269.72718 * 12 10 8 14 14 H 1.48505 * 109.47281 * 29.72474 * 12 10 8 15 15 H 1.48501 * 109.47274 * 149.72572 * 12 10 8 16 16 C 1.53005 * 60.54411 * 268.33393 * 6 4 3 17 17 H 1.09008 * 119.52465 * 248.26951 * 16 6 4 18 18 C 1.48556 * 110.99929 * 244.57904 * 2 1 3 19 19 H 1.09000 * 109.46909 * 60.00020 * 1 2 3 20 20 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46901 * 300.00643 * 1 2 3 22 22 H 1.08996 * 110.41443 * 82.17524 * 3 2 1 23 23 H 1.09007 * 110.50964 * 319.78810 * 3 2 1 24 24 H 0.97005 * 119.99656 * 179.97438 * 11 10 8 25 25 H 1.09000 * 110.41237 * 40.26088 * 18 2 1 26 26 H 1.09002 * 110.41278 * 277.81850 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 1 4.2658 1.5076 0.1328 6 6 3.6586 1.2945 -2.0486 7 1 2.8437 1.6816 -2.6601 8 6 5.0471 1.6073 -2.5438 9 1 5.8439 0.8914 -2.4054 10 6 5.3004 2.8075 -3.1735 11 7 4.3302 3.6794 -3.3414 12 14 7.0197 3.1921 -3.7941 13 1 7.7889 3.8808 -2.7267 14 1 7.7072 1.9284 -4.1626 15 1 6.9302 4.0727 -4.9865 16 6 3.4432 -0.0540 -1.3585 17 1 4.2658 -0.7673 -1.3045 18 6 2.0014 -0.5953 -1.2526 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 2.0079 1.7917 1.0120 23 1 1.4105 2.0229 -0.6592 24 1 4.5085 4.5240 -3.7841 25 1 1.4098 -0.2713 -2.1089 26 1 2.0079 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986356.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:01 Heat of formation + Delta-G solvation = 10.889922 kcal Electronic energy + Delta-G solvation = -9434.351435 eV Core-core repulsion = 7705.860978 eV Total energy + Delta-G solvation = -1728.490457 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.54090 -35.80459 -34.01145 -29.26993 -28.88301 -26.54768 -22.89050 -21.30012 -20.91044 -18.77682 -16.87647 -16.47804 -15.76181 -15.15186 -14.83907 -13.94288 -13.74841 -13.62285 -12.93246 -12.77224 -12.49089 -12.38986 -12.30143 -11.92718 -11.30130 -11.12660 -10.44230 -10.24787 -9.41287 -8.25135 -6.32875 1.41240 1.41750 1.53785 2.37630 2.87295 3.16138 3.39101 3.85075 4.11209 4.34210 4.48009 4.57732 4.61772 4.62267 4.68966 4.73559 4.95553 5.07701 5.25253 5.46548 5.47783 5.71948 5.77916 6.08735 6.30305 6.74518 7.31428 8.86317 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.106210 B = 0.011977 C = 0.011517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.566396 B = 2337.287817 C = 2430.584736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.523 5.523 3 C 0.072 3.928 4 C -0.196 4.196 5 H 0.088 0.912 6 C 0.036 3.964 7 H 0.041 0.959 8 C -0.520 4.520 9 H 0.059 0.941 10 C 0.015 3.985 11 N -0.921 5.921 12 Si 0.970 3.030 13 H -0.272 1.272 14 H -0.264 1.264 15 H -0.279 1.279 16 C -0.187 4.187 17 H 0.099 0.901 18 C 0.071 3.929 19 H 0.022 0.978 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.028 0.972 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -4.876 3.879 7.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.248 5.248 3 C -0.056 4.056 4 C -0.216 4.216 5 H 0.106 0.894 6 C 0.017 3.983 7 H 0.059 0.941 8 C -0.557 4.557 9 H 0.077 0.923 10 C -0.185 4.185 11 N -0.559 5.559 12 Si 0.794 3.206 13 H -0.197 1.197 14 H -0.188 1.188 15 H -0.204 1.204 16 C -0.207 4.207 17 H 0.117 0.883 18 C -0.057 4.057 19 H 0.041 0.959 20 H 0.104 0.896 21 H 0.099 0.901 22 H 0.106 0.894 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.132 -5.018 4.292 7.789 hybrid contribution 0.489 0.909 -1.001 1.438 sum -3.643 -4.109 3.291 6.401 Atomic orbital electron populations 1.22588 0.86807 1.03118 1.01112 1.65560 1.09303 1.14871 1.35019 1.22489 0.93149 0.89742 1.00215 1.23693 0.96446 1.04311 0.97165 0.89383 1.19875 0.96524 0.92700 0.89223 0.94105 1.20977 0.94346 1.02554 1.37857 0.92259 1.25940 1.01670 0.95719 0.95190 1.70094 1.34110 1.08769 1.42927 0.85373 0.78795 0.78448 0.77959 1.19703 1.18788 1.20377 1.23583 0.97220 0.90713 1.09136 0.88274 1.22553 0.92631 1.00126 0.90341 0.95928 0.89567 0.90140 0.89434 0.95407 0.92462 0.94800 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.53 127.69 1.22 1.54 15 2 N -0.52 -18.35 5.66 -907.63 -5.14 -23.49 15 3 C 0.07 2.83 6.29 86.45 0.54 3.37 15 4 C -0.20 -9.21 6.83 -9.90 -0.07 -9.27 15 5 H 0.09 4.22 8.14 -2.39 -0.02 4.20 15 6 C 0.04 1.91 5.12 -11.54 -0.06 1.85 15 7 H 0.04 2.40 7.90 -2.39 -0.02 2.38 15 8 C -0.52 -29.75 9.20 25.60 0.24 -29.52 15 9 H 0.06 3.30 7.81 -2.91 -0.02 3.28 15 10 C 0.01 0.83 5.46 84.66 0.46 1.29 15 11 N -0.92 -54.87 13.13 21.45 0.28 -54.59 15 12 Si 0.97 43.62 29.54 68.60 2.03 45.64 15 13 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 14 H -0.26 -11.39 7.11 99.48 0.71 -10.69 15 15 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 16 C -0.19 -8.33 6.83 -9.90 -0.07 -8.40 15 17 H 0.10 4.31 8.14 -2.38 -0.02 4.29 15 18 C 0.07 2.61 6.30 86.45 0.54 3.15 15 19 H 0.02 0.63 7.97 -2.39 -0.02 0.61 15 20 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.08 1.91 8.14 -2.39 -0.02 1.90 15 22 H 0.09 3.11 8.14 -2.39 -0.02 3.09 15 23 H 0.03 1.16 7.97 -2.38 -0.02 1.14 15 24 H 0.27 14.83 8.31 -92.70 -0.77 14.06 15 25 H 0.03 1.28 7.90 -2.39 -0.02 1.26 15 26 H 0.10 3.07 8.14 -2.39 -0.02 3.05 15 Total: -1.00 -61.60 221.93 1.12 -60.49 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.14 Total: 7.93 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 2.81 Total: -35.99 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -4.86 Total: -78.07 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -61.60 1.12 -60.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986356.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.376 kcal (2) G-P(sol) polarization free energy of solvation -61.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds