Wall clock time and date at job start Mon Mar 30 2020 01:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00079 * 2 1 4 4 H 1.48502 * 109.47113 * 239.99996 * 3 2 1 5 5 H 1.48504 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47405 * 119.99793 * 3 2 1 7 7 C 1.37880 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00149 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.49596 * 110.99935 * 281.46722 * 10 9 7 12 12 C 1.56749 * 99.23657 * 242.11376 * 11 10 9 13 13 C 1.57876 * 106.03857 * 41.30860 * 12 11 10 14 14 C 1.50242 * 110.99720 * 170.00005 * 10 9 7 15 15 C 1.54885 * 103.48491 * 161.77010 * 14 10 9 16 16 H 0.96994 * 120.00019 * 0.02562 * 1 2 3 17 17 H 1.08998 * 109.47138 * 60.00328 * 9 7 2 18 18 H 1.09006 * 109.46976 * 300.00240 * 9 7 2 19 19 H 1.09001 * 111.44911 * 359.61472 * 11 10 9 20 20 H 1.09003 * 111.44847 * 124.55669 * 11 10 9 21 21 H 1.09000 * 118.44365 * 181.31051 * 12 11 10 22 22 H 1.08996 * 114.83810 * 188.31522 * 13 12 11 23 23 H 1.09008 * 114.67992 * 54.13901 * 13 12 11 24 24 H 1.09002 * 117.57680 * 296.57549 * 14 10 9 25 25 H 1.09000 * 114.44298 * 47.51122 * 15 14 10 26 26 H 1.08998 * 114.44162 * 180.92387 * 15 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.7651 -3.8427 -1.3693 12 6 2.2404 -5.2988 -1.6172 13 6 0.7625 -5.3302 -1.0630 14 6 1.5057 -4.9226 0.2430 15 6 2.5268 -5.9769 -0.2514 16 1 -0.4850 0.8400 -0.0004 17 1 0.6241 -2.5568 -0.8903 18 1 0.6247 -2.5571 0.8897 19 1 2.3485 -3.1407 -2.0916 20 1 3.8545 -3.8060 -1.3657 21 1 2.5002 -5.7918 -2.5540 22 1 0.3054 -6.3192 -1.0337 23 1 0.1073 -4.5598 -1.4701 24 1 1.0064 -5.0564 1.2027 25 1 3.5433 -5.8253 0.1117 26 1 2.1855 -7.0088 -0.1687 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995215.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:47 Heat of formation + Delta-G solvation = 59.282753 kcal Electronic energy + Delta-G solvation = -9579.609230 eV Core-core repulsion = 7853.217244 eV Total energy + Delta-G solvation = -1726.391986 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.30225 -33.41024 -31.29271 -27.39813 -26.11248 -24.74537 -22.18555 -19.56855 -18.84378 -16.22595 -15.63140 -14.65220 -14.37383 -13.62396 -12.47697 -12.05671 -11.95056 -11.54059 -11.16405 -11.02154 -10.77013 -10.59123 -10.17107 -10.06961 -9.74652 -9.58870 -9.17271 -8.40329 -7.42207 -6.00065 -4.01437 3.35725 3.39077 3.42698 4.43942 4.76520 4.84405 4.99535 5.10228 5.34370 5.56182 5.74831 6.02850 6.17523 6.24295 6.30239 6.44723 6.52516 6.62092 6.71143 6.99922 7.33968 7.78148 7.96922 8.19057 8.52829 9.06416 9.62554 11.10895 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.096206 B = 0.012804 C = 0.012164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 290.973054 B = 2186.300529 C = 2301.311179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.179 3.821 10 N -0.485 5.485 11 C 0.046 3.954 12 C -0.148 4.148 13 C -0.171 4.171 14 C 0.030 3.970 15 C -0.142 4.142 16 H 0.262 0.738 17 H -0.002 1.002 18 H 0.028 0.972 19 H 0.066 0.934 20 H 0.075 0.925 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 -8.485 -2.169 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.053 3.947 10 N -0.208 5.208 11 C -0.082 4.082 12 C -0.166 4.166 13 C -0.210 4.210 14 C -0.080 4.080 15 C -0.179 4.179 16 H 0.071 0.929 17 H 0.015 0.985 18 H 0.046 0.954 19 H 0.085 0.915 20 H 0.093 0.907 21 H 0.113 0.887 22 H 0.102 0.898 23 H 0.085 0.915 24 H 0.123 0.877 25 H 0.086 0.914 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.980 -8.171 -1.714 8.864 hybrid contribution -0.334 0.763 -0.641 1.051 sum 2.647 -7.407 -2.354 8.211 Atomic orbital electron populations 1.69952 1.06063 1.26857 1.51099 1.24998 0.94885 0.99325 0.95479 0.86536 0.79412 0.82649 0.78666 1.20285 1.21350 1.20145 1.21107 0.93523 0.89904 1.49961 0.92015 1.19925 0.90541 0.87879 0.96368 1.66872 1.29496 1.01248 1.23180 1.23622 0.99681 0.92848 0.92064 1.25029 0.96756 0.97919 0.96940 1.24702 0.95604 1.01083 0.99653 1.24726 0.94743 0.91854 0.96670 1.23772 0.99947 0.97283 0.96946 0.92892 0.98467 0.95362 0.91549 0.90681 0.88709 0.89769 0.91487 0.87677 0.91404 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.54 15 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 15 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.51 -14.74 9.10 -34.44 -0.31 -15.06 15 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 15 9 C 0.18 4.83 4.28 -4.98 -0.02 4.81 15 10 N -0.48 -11.09 5.56 -224.71 -1.25 -12.34 15 11 C 0.05 0.93 6.65 -0.29 0.00 0.92 15 12 C -0.15 -2.44 6.45 -90.76 -0.59 -3.02 15 13 C -0.17 -2.93 7.68 -26.78 -0.21 -3.13 15 14 C 0.03 0.56 5.75 -69.38 -0.40 0.16 15 15 C -0.14 -2.23 7.49 -28.76 -0.22 -2.44 15 16 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 17 H 0.00 -0.07 6.91 -51.93 -0.36 -0.43 15 18 H 0.03 0.82 8.09 -51.93 -0.42 0.40 15 19 H 0.07 1.44 7.54 -51.93 -0.39 1.05 15 20 H 0.07 1.42 8.14 -51.93 -0.42 0.99 15 21 H 0.09 1.35 8.14 -51.93 -0.42 0.92 15 22 H 0.08 1.20 7.93 -51.93 -0.41 0.79 15 23 H 0.07 1.29 7.27 -51.92 -0.38 0.91 15 24 H 0.11 1.91 8.14 -51.93 -0.42 1.48 15 25 H 0.07 1.09 8.09 -51.93 -0.42 0.67 15 26 H 0.08 1.02 7.92 -51.93 -0.41 0.61 15 LS Contribution 216.87 15.07 3.27 3.27 Total: -1.00 -30.30 216.87 -7.71 -38.01 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -3.60 Total: -3.18 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.84 Total: -16.28 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.51 Total: -38.87 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.30 -7.71 -38.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995215.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.289 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds