Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48534 * 111.00197 * 2 1 4 4 C 1.54934 * 103.23283 * 159.64937 * 3 2 1 5 5 C 1.54557 * 102.94097 * 322.53488 * 4 3 2 6 6 H 1.09004 * 117.58124 * 241.12108 * 5 4 3 7 7 C 1.52937 * 118.20050 * 85.57270 * 5 4 3 8 8 H 1.09004 * 117.46143 * 160.67416 * 7 5 4 9 9 C 1.50702 * 117.45279 * 15.87191 * 7 5 4 10 10 H 1.08002 * 120.00299 * 359.89573 * 9 7 5 11 11 C 1.37884 * 119.99942 * 179.61131 * 9 7 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.47921 * 111.02604 * 117.33292 * 2 1 3 18 18 H 1.09001 * 117.62977 * 355.01103 * 17 2 1 19 19 H 1.08999 * 109.47662 * 59.87650 * 1 2 3 20 20 H 1.09007 * 109.47314 * 179.87347 * 1 2 3 21 21 H 1.09001 * 109.47191 * 299.87389 * 1 2 3 22 22 H 1.09000 * 110.66179 * 41.21275 * 3 2 1 23 23 H 1.09001 * 110.81061 * 278.15750 * 3 2 1 24 24 H 1.09005 * 110.72092 * 204.17621 * 4 3 2 25 25 H 1.08996 * 110.72230 * 80.90105 * 4 3 2 26 26 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4485 1.2110 0.5245 5 6 3.2968 0.1074 1.5959 6 1 3.5634 0.3603 2.6222 7 6 3.3486 -1.3522 1.1424 8 1 3.5646 -2.1064 1.8992 9 6 3.9013 -1.6338 -0.2311 10 1 4.2403 -0.8194 -0.8542 11 6 3.9797 -2.9317 -0.6899 12 7 3.5670 -3.9234 0.0689 13 14 4.6719 -3.2813 -2.3893 14 1 6.1390 -3.4898 -2.2929 15 1 4.0336 -4.5029 -2.9421 16 1 4.3934 -2.1292 -3.2839 17 6 1.9996 -0.6340 1.2266 18 1 1.2830 -0.9345 1.9909 19 1 -0.3634 0.5157 -0.8888 20 1 -0.3634 -1.0277 -0.0023 21 1 -0.3634 0.5119 0.8911 22 1 1.4228 2.0207 0.6720 23 1 2.0051 1.8000 -1.0086 24 1 3.8113 2.1361 0.9725 25 1 4.1116 0.8828 -0.2759 26 1 3.6218 -4.8365 -0.2541 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = 18.692329 kcal Electronic energy + Delta-G solvation = -9682.538015 eV Core-core repulsion = 7954.385896 eV Total energy + Delta-G solvation = -1728.152119 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.42612 -35.13699 -33.63234 -31.13766 -27.53460 -26.08450 -23.30459 -21.14093 -20.81960 -18.01503 -16.98975 -16.57227 -15.68892 -14.94806 -14.30891 -14.16137 -14.02174 -13.02311 -12.81805 -12.78135 -12.41609 -12.28249 -12.11658 -11.86948 -11.24871 -10.98697 -10.45253 -10.16398 -8.80516 -8.07615 -6.06154 1.43889 1.45294 1.56303 2.48850 2.95978 3.28523 3.45609 4.08859 4.31539 4.43463 4.50428 4.57290 4.62310 4.68518 4.86747 4.90525 4.98997 5.18317 5.24234 5.43972 5.55438 5.89299 6.20976 6.35651 6.61616 6.95201 7.52659 9.04662 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.054227 B = 0.016958 C = 0.016737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.226069 B = 1650.747082 C = 1672.526243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.505 5.505 3 C 0.044 3.956 4 C -0.087 4.087 5 C -0.196 4.196 6 H 0.105 0.895 7 C 0.022 3.978 8 H 0.051 0.949 9 C -0.464 4.464 10 H 0.060 0.940 11 C 0.006 3.994 12 N -0.935 5.935 13 Si 0.958 3.042 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.268 1.268 17 C -0.036 4.036 18 H 0.082 0.918 19 H 0.079 0.921 20 H 0.051 0.949 21 H 0.030 0.970 22 H 0.050 0.950 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 8.832 -0.154 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.228 5.228 3 C -0.083 4.083 4 C -0.125 4.125 5 C -0.215 4.215 6 H 0.123 0.877 7 C 0.002 3.998 8 H 0.069 0.931 9 C -0.502 4.502 10 H 0.078 0.922 11 C -0.191 4.191 12 N -0.575 5.575 13 Si 0.784 3.216 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.193 1.193 17 C -0.145 4.145 18 H 0.100 0.900 19 H 0.098 0.902 20 H 0.070 0.930 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.861 8.379 -0.642 8.877 hybrid contribution -0.162 -0.276 0.176 0.365 sum -3.022 8.103 -0.466 8.661 Atomic orbital electron populations 1.22422 0.87878 1.01284 1.00822 1.64155 1.07810 1.14144 1.36672 1.23413 0.94829 0.89320 1.00706 1.21994 0.96508 0.96723 0.97272 1.23800 1.03674 0.94777 0.99291 0.87655 1.20054 0.93855 0.88985 0.96873 0.93057 1.20753 1.38084 0.91882 0.99455 0.92214 1.25779 0.96057 0.96273 1.01011 1.70093 1.49403 0.99433 1.38600 0.85551 0.78332 0.77459 0.80259 1.19938 1.21355 1.19257 1.23754 0.90482 1.07940 0.92368 0.90016 0.90249 0.93017 0.95140 0.93146 0.89903 0.89376 0.92152 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.84 9.47 127.69 1.21 2.05 15 2 N -0.50 -21.27 4.98 -884.10 -4.40 -25.67 15 3 C 0.04 1.54 6.56 86.65 0.57 2.10 15 4 C -0.09 -3.23 6.53 31.79 0.21 -3.02 15 5 C -0.20 -8.31 7.01 -9.98 -0.07 -8.38 15 6 H 0.11 3.97 8.14 -2.39 -0.02 3.95 15 7 C 0.02 1.15 5.55 -11.54 -0.06 1.08 15 8 H 0.05 2.97 7.90 -2.38 -0.02 2.95 15 9 C -0.46 -26.39 8.30 25.60 0.21 -26.17 15 10 H 0.06 3.35 5.93 -2.91 -0.02 3.33 15 11 C 0.01 0.33 5.46 84.66 0.46 0.79 15 12 N -0.93 -57.21 13.12 21.45 0.28 -56.93 15 13 Si 0.96 45.55 29.54 68.60 2.03 47.58 15 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 15 H -0.29 -13.53 7.11 99.48 0.71 -12.82 15 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 17 C -0.04 -1.65 6.43 45.04 0.29 -1.36 15 18 H 0.08 3.62 7.99 -2.39 -0.02 3.60 15 19 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 20 H 0.05 1.87 8.14 -2.38 -0.02 1.85 15 21 H 0.03 0.93 8.12 -2.39 -0.02 0.91 15 22 H 0.05 1.52 8.00 -2.39 -0.02 1.50 15 23 H 0.08 2.62 8.14 -2.39 -0.02 2.61 15 24 H 0.09 2.61 8.14 -2.38 -0.02 2.59 15 25 H 0.06 2.50 6.11 -2.39 -0.01 2.49 15 26 H 0.26 15.00 8.31 -92.70 -0.77 14.23 15 Total: -1.00 -63.77 217.33 1.87 -61.90 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.14 Total: 6.02 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 2.82 Total: -32.90 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -4.12 Total: -82.60 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -63.77 1.87 -61.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.597 kcal (2) G-P(sol) polarization free energy of solvation -63.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds