Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00123 * 2 1 4 4 H 1.48497 * 109.47695 * 270.00012 * 3 2 1 5 5 H 1.48502 * 109.47233 * 30.00224 * 3 2 1 6 6 H 1.48504 * 109.47226 * 149.99981 * 3 2 1 7 7 C 1.37881 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00093 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99840 * 359.97438 * 7 2 1 10 10 H 1.09008 * 112.95930 * 52.14020 * 9 7 2 11 11 C 1.53942 * 113.76013 * 280.49611 * 9 7 2 12 12 C 1.53935 * 86.34007 * 221.96206 * 11 9 7 13 13 N 1.47957 * 86.18313 * 23.71732 * 12 11 9 14 14 C 1.46896 * 111.00588 * 222.41474 * 13 12 11 15 15 C 1.53002 * 117.50169 * 245.49119 * 14 13 12 16 16 C 1.53000 * 117.50194 * 176.86670 * 14 13 12 17 17 H 0.97000 * 119.99465 * 0.02562 * 1 2 3 18 18 H 1.08995 * 113.73122 * 107.60562 * 11 9 7 19 19 H 1.08997 * 113.73008 * 336.32007 * 11 9 7 20 20 H 1.08994 * 113.75843 * 138.03482 * 12 11 9 21 21 H 1.09000 * 113.76435 * 269.40081 * 12 11 9 22 22 H 1.09005 * 115.54852 * 31.19580 * 14 13 12 23 23 H 1.08996 * 117.49655 * 359.97438 * 15 14 13 24 24 H 1.08998 * 117.49989 * 145.02010 * 15 14 13 25 25 H 1.08996 * 117.49799 * 214.97792 * 16 14 13 26 26 H 1.08998 * 117.49922 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5046 -2.5592 -0.7927 11 6 0.7191 -2.9082 1.3849 12 6 1.1774 -4.3344 1.0306 13 7 2.1229 -3.6910 0.0918 14 6 2.1669 -4.4115 -1.1876 15 6 3.4795 -5.1008 -1.5655 16 6 3.0451 -3.8289 -2.2967 17 1 -0.4849 0.8401 -0.0004 18 1 -0.3613 -2.8074 1.4873 19 1 1.2691 -2.4641 2.2146 20 1 1.6637 -4.8568 1.8544 21 1 0.4102 -4.9331 0.5397 22 1 1.2383 -4.8991 -1.4847 23 1 4.3106 -5.0193 -0.8650 24 1 3.4148 -6.0421 -2.1113 25 1 2.6946 -3.9336 -3.3235 26 1 3.5906 -2.9112 -2.0770 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261017608.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = 35.907748 kcal Electronic energy + Delta-G solvation = -9549.830733 eV Core-core repulsion = 7822.425131 eV Total energy + Delta-G solvation = -1727.405602 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.47839 -36.79057 -34.49181 -28.95549 -28.28142 -24.81699 -23.05562 -21.95886 -20.41312 -18.57463 -17.32070 -16.58632 -16.01515 -15.11910 -14.64371 -14.11579 -13.85469 -13.15577 -12.79836 -12.50682 -12.30856 -12.19363 -12.07155 -11.71260 -11.23233 -10.99928 -10.64879 -10.48866 -9.40739 -8.16159 -6.24157 1.41256 1.41631 1.53185 2.41325 2.95362 3.12445 3.31338 4.00963 4.09058 4.18438 4.29379 4.45208 4.68866 4.79796 4.81324 4.88315 5.10463 5.19033 5.26686 5.37885 5.50049 5.54997 5.82951 6.35325 6.56062 6.86262 7.43069 8.93856 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.054684 B = 0.016402 C = 0.013824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.910352 B = 1706.744022 C = 2024.984119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.051 0.949 9 C 0.179 3.821 10 H 0.009 0.991 11 C -0.136 4.136 12 C 0.012 3.988 13 N -0.472 5.472 14 C -0.046 4.046 15 C -0.142 4.142 16 C -0.173 4.173 17 H 0.263 0.737 18 H 0.044 0.956 19 H 0.062 0.938 20 H 0.093 0.907 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 -6.884 -1.472 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.072 3.928 10 H 0.026 0.974 11 C -0.175 4.175 12 C -0.117 4.117 13 N -0.195 5.195 14 C -0.156 4.156 15 C -0.179 4.179 16 C -0.211 4.211 17 H 0.072 0.928 18 H 0.063 0.937 19 H 0.081 0.919 20 H 0.111 0.889 21 H 0.087 0.913 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.780 -6.705 -1.311 7.808 hybrid contribution -0.754 0.925 -0.332 1.238 sum 3.026 -5.780 -1.643 6.728 Atomic orbital electron populations 1.70071 1.07282 1.27589 1.51467 1.25749 0.95709 1.02464 0.94732 0.85515 0.78624 0.78950 0.78320 1.19995 1.20560 1.19398 1.21109 0.92842 0.90780 1.50046 0.93114 1.20657 0.90002 0.89507 0.92681 0.97369 1.23304 0.98657 0.95479 1.00046 1.23828 0.94724 0.95850 0.97286 1.68398 1.39638 1.04571 1.06933 1.23139 0.95098 1.03612 0.93713 1.23000 0.96681 0.96074 1.02163 1.22872 1.03814 0.97936 0.96441 0.92809 0.93730 0.91884 0.88874 0.91339 0.89780 0.89111 0.86366 0.87661 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.72 13.29 21.45 0.28 -54.43 15 2 C 0.01 0.70 5.46 84.66 0.46 1.16 15 3 Si 0.96 44.65 29.54 68.60 2.03 46.68 15 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 7 C -0.51 -29.28 9.07 25.60 0.23 -29.05 15 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 15 9 C 0.18 9.44 2.97 44.27 0.13 9.58 15 10 H 0.01 0.49 7.93 -2.38 -0.02 0.48 15 11 C -0.14 -6.44 7.84 31.24 0.24 -6.20 15 12 C 0.01 0.46 7.98 86.41 0.69 1.15 15 13 N -0.47 -21.19 6.20 -862.92 -5.35 -26.54 15 14 C -0.05 -1.77 4.90 44.92 0.22 -1.55 15 15 C -0.14 -4.35 10.46 30.60 0.32 -4.03 15 16 C -0.17 -6.23 10.41 30.60 0.32 -5.91 15 17 H 0.26 14.70 8.31 -92.71 -0.77 13.93 15 18 H 0.04 2.11 8.14 -2.39 -0.02 2.09 15 19 H 0.06 3.08 8.09 -2.39 -0.02 3.06 15 20 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 21 H 0.07 2.43 7.69 -2.39 -0.02 2.41 15 22 H 0.08 3.07 7.77 -2.38 -0.02 3.05 15 23 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 24 H 0.12 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.11 3.27 8.14 -2.39 -0.02 3.25 15 26 H 0.07 3.11 8.14 -2.39 -0.02 3.09 15 Total: -1.00 -61.93 225.89 0.72 -61.21 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.14 Total: 7.94 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 2.62 Total: -34.85 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -5.06 Total: -80.98 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -61.93 0.72 -61.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261017608.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.120 kcal (2) G-P(sol) polarization free energy of solvation -61.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds