Wall clock time and date at job start Mon Mar 30 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48503 * 109.47475 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47140 * 299.99587 * 3 2 1 6 6 H 1.48503 * 109.47394 * 59.99619 * 3 2 1 7 7 C 1.37872 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00530 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99777 * 0.02562 * 7 2 1 10 10 H 1.08993 * 112.95897 * 307.85291 * 9 7 2 11 11 C 1.53934 * 113.75955 * 79.50550 * 9 7 2 12 12 C 1.53935 * 86.45688 * 138.09485 * 11 9 7 13 13 N 1.47967 * 113.85682 * 176.11678 * 9 7 2 14 14 C 1.46894 * 111.00177 * 108.09010 * 13 9 7 15 15 C 1.53008 * 117.49688 * 248.62042 * 14 13 9 16 16 C 1.53000 * 117.49794 * 179.97438 * 14 13 9 17 17 H 0.96998 * 120.00318 * 0.02562 * 1 2 3 18 18 H 1.09002 * 113.73279 * 252.50675 * 11 9 7 19 19 H 1.09002 * 113.73078 * 23.68374 * 11 9 7 20 20 H 1.09000 * 113.76137 * 90.65073 * 12 11 9 21 21 H 1.09002 * 113.75885 * 222.01772 * 12 11 9 22 22 H 1.09004 * 115.55378 * 34.32462 * 14 13 9 23 23 H 1.08996 * 117.49451 * 359.97438 * 15 14 13 24 24 H 1.08997 * 117.50118 * 145.01853 * 15 14 13 25 25 H 1.08997 * 117.49993 * 214.97355 * 16 14 13 26 26 H 1.08996 * 117.49769 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5049 -2.5592 0.7927 11 6 0.7193 -2.9082 -1.3849 12 6 1.1753 -4.3357 -1.0327 13 7 2.1212 -3.6924 -0.0905 14 6 2.1632 -4.4122 1.1893 15 6 3.4817 -4.3968 1.9655 16 6 3.0229 -5.6758 1.2612 17 1 -0.4850 0.8400 -0.0004 18 1 -0.3610 -2.8057 -1.4880 19 1 1.2693 -2.4641 -2.2146 20 1 0.4068 -4.9341 -0.5434 21 1 1.6616 -4.8573 -1.8571 22 1 1.2387 -4.3992 1.7667 23 1 4.3179 -3.8529 1.5263 24 1 3.4248 -4.3734 3.0538 25 1 2.6644 -6.4936 1.8864 26 1 3.5569 -5.9732 0.3588 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261017609.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:21 Heat of formation + Delta-G solvation = 55.210316 kcal Electronic energy + Delta-G solvation = -9504.110521 eV Core-core repulsion = 7777.541941 eV Total energy + Delta-G solvation = -1726.568580 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.71860 -35.29560 -32.34005 -26.85885 -26.57618 -22.89035 -21.69037 -20.35437 -18.58550 -16.51746 -15.66072 -14.60310 -14.28643 -13.42768 -12.89418 -12.59400 -11.89538 -11.23288 -11.02053 -10.90238 -10.54503 -10.39287 -10.24458 -9.97767 -9.40405 -9.26090 -8.95706 -8.37837 -7.63909 -6.01310 -4.02025 3.32077 3.39621 3.45502 4.36436 4.43221 4.90178 5.30479 5.49020 5.53051 5.74254 5.88870 6.04462 6.18494 6.25184 6.35986 6.50211 6.68396 6.85265 6.94650 7.14007 7.41288 7.43947 7.96342 8.33470 8.46395 9.03874 9.61583 11.09084 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.060280 B = 0.015205 C = 0.013136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.387075 B = 1841.014696 C = 2131.086329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.492 4.492 8 H 0.064 0.936 9 C 0.187 3.813 10 H 0.039 0.961 11 C -0.135 4.135 12 C -0.005 4.005 13 N -0.460 5.460 14 C -0.011 4.011 15 C -0.162 4.162 16 C -0.183 4.183 17 H 0.260 0.740 18 H 0.051 0.949 19 H 0.074 0.926 20 H 0.050 0.950 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -6.587 0.974 7.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.080 3.920 10 H 0.057 0.943 11 C -0.174 4.174 12 C -0.134 4.134 13 N -0.184 5.184 14 C -0.121 4.121 15 C -0.199 4.199 16 C -0.220 4.220 17 H 0.070 0.930 18 H 0.070 0.930 19 H 0.092 0.908 20 H 0.069 0.931 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.115 0.885 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.983 -6.396 0.820 7.105 hybrid contribution -0.504 0.734 0.382 0.969 sum 2.479 -5.662 1.203 6.297 Atomic orbital electron populations 1.69971 1.05970 1.26582 1.50884 1.24974 0.94871 0.99187 0.95181 0.86459 0.80186 0.83408 0.77484 1.19646 1.21021 1.21086 1.20932 0.93380 0.89119 1.49621 0.91775 1.20902 0.89818 0.88750 0.92552 0.94319 1.23409 0.99354 0.92908 1.01756 1.23797 0.94981 0.97582 0.97007 1.68553 1.40009 1.04898 1.04923 1.23018 0.94056 0.98898 0.96155 1.22842 0.99163 1.00151 0.97750 1.22919 1.05152 0.91251 1.02687 0.93037 0.93031 0.90754 0.93124 0.91418 0.90398 0.88471 0.89658 0.89802 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.29 55.43 0.74 -25.46 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 15 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 7 C -0.49 -14.02 9.08 -34.44 -0.31 -14.33 15 8 H 0.06 1.86 7.81 -52.48 -0.41 1.45 15 9 C 0.19 4.87 3.01 -67.80 -0.20 4.67 15 10 H 0.04 1.09 7.72 -51.93 -0.40 0.69 15 11 C -0.14 -3.19 7.83 -25.80 -0.20 -3.40 15 12 C 0.00 -0.10 8.00 -2.63 -0.02 -0.12 15 13 N -0.46 -10.50 6.20 -223.87 -1.39 -11.88 15 14 C -0.01 -0.23 4.85 -67.71 -0.33 -0.56 15 15 C -0.16 -2.86 10.46 -26.70 -0.28 -3.14 15 16 C -0.18 -2.96 10.46 -26.70 -0.28 -3.24 15 17 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 18 H 0.05 1.21 8.14 -51.93 -0.42 0.78 15 19 H 0.07 1.80 8.09 -51.93 -0.42 1.38 15 20 H 0.05 0.96 7.93 -51.93 -0.41 0.55 15 21 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 22 H 0.08 1.57 7.83 -51.93 -0.41 1.16 15 23 H 0.10 1.81 8.14 -51.93 -0.42 1.38 15 24 H 0.08 1.34 8.14 -51.93 -0.42 0.91 15 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 LS Contribution 226.04 15.07 3.41 3.41 Total: -1.00 -29.20 226.04 -7.71 -36.91 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -3.72 Total: -1.14 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -1.72 Total: -18.53 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.65 Total: -37.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.20 -7.71 -36.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261017609.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.121 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds