Wall clock time and date at job start Mon Mar 30 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40015 * 126.13999 * 2 1 4 4 C 1.31690 * 109.06003 * 180.02562 * 3 2 1 5 5 N 1.39900 * 125.54171 * 180.02562 * 4 3 2 6 6 C 1.39247 * 108.91852 * 359.73462 * 4 3 2 7 7 C 1.37522 * 126.14380 * 180.02562 * 2 1 3 8 8 C 1.40223 * 126.59732 * 359.96959 * 7 2 1 9 9 H 1.07998 * 119.99739 * 340.89700 * 8 7 2 10 10 C 1.40134 * 119.99850 * 160.89913 * 8 7 2 11 11 N 1.30772 * 120.00185 * 336.92210 * 10 8 7 12 12 Si 1.86801 * 120.00004 * 156.91613 * 10 8 7 13 13 H 1.48500 * 109.47412 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.46827 * 60.00117 * 12 10 8 15 15 H 1.48498 * 109.47138 * 300.00401 * 12 10 8 16 16 H 1.09001 * 109.47510 * 269.96079 * 1 2 3 17 17 H 1.09007 * 109.47477 * 29.95801 * 1 2 3 18 18 H 1.09007 * 109.47041 * 149.95900 * 1 2 3 19 19 H 0.96999 * 119.99694 * 359.97438 * 5 4 3 20 20 H 0.96999 * 120.00342 * 179.97438 * 5 4 3 21 21 H 1.08004 * 126.24912 * 180.29684 * 6 4 3 22 22 H 0.97001 * 120.00288 * 353.93090 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2907 1.1307 0.0000 4 6 3.5495 0.7439 -0.0006 5 7 4.6612 1.5932 -0.0002 6 6 3.5942 -0.6478 0.0052 7 6 2.2761 -1.1105 -0.0005 8 6 1.8601 -2.4496 -0.0005 9 1 0.8560 -2.7031 0.3060 10 6 2.7472 -3.4589 -0.3981 11 7 3.7599 -3.1711 -1.1738 12 14 2.4832 -5.2155 0.1799 13 1 3.5505 -6.0854 -0.3763 14 1 1.1588 -5.6969 -0.2885 15 1 2.5299 -5.2608 1.6634 16 1 -0.3634 -0.0007 1.0276 17 1 -0.3634 0.8904 -0.5132 18 1 -0.3633 -0.8897 -0.5145 19 1 4.5366 2.5552 0.0001 20 1 5.5566 1.2202 -0.0003 21 1 4.4853 -1.2581 0.0107 22 1 3.8482 -2.2794 -1.5453 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023613.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:54 Heat of formation + Delta-G solvation = 57.626773 kcal Electronic energy + Delta-G solvation = -9280.752035 eV Core-core repulsion = 7450.747897 eV Total energy + Delta-G solvation = -1830.004138 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.93813 -34.08933 -33.35116 -30.11944 -28.37225 -25.18303 -24.28376 -19.88287 -18.99565 -17.47045 -15.54008 -14.66219 -14.02449 -13.87149 -13.82643 -12.90666 -12.39137 -11.80267 -11.37722 -11.11912 -10.88680 -10.36733 -9.74315 -9.56502 -9.07779 -8.60260 -7.26124 -7.18375 -6.43498 -4.50716 3.09879 3.20434 3.40248 3.71716 3.95945 4.13546 4.54289 5.11370 5.22396 5.88811 6.16858 6.28383 6.94805 7.25395 7.35341 7.66690 7.89260 8.00907 8.19916 8.49110 8.87457 8.89319 9.18332 9.73169 10.18881 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.059017 B = 0.017606 C = 0.014129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.325711 B = 1589.980593 C = 1981.309213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.437 5.437 3 N -0.438 5.438 4 C 0.345 3.655 5 N -0.862 5.862 6 C -0.443 4.443 7 C 0.278 3.722 8 C -0.530 4.530 9 H 0.074 0.926 10 C 0.050 3.950 11 N -0.798 5.798 12 Si 1.073 2.927 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.276 1.276 16 H 0.040 0.960 17 H 0.061 0.939 18 H 0.070 0.930 19 H 0.386 0.614 20 H 0.397 0.603 21 H 0.119 0.881 22 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 0.094 1.256 1.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.227 5.227 3 N -0.271 5.271 4 C 0.090 3.910 5 N -0.413 5.413 6 C -0.475 4.475 7 C 0.158 3.842 8 C -0.566 4.566 9 H 0.092 0.908 10 C -0.175 4.175 11 N -0.423 5.423 12 Si 0.897 3.103 13 H -0.199 1.199 14 H -0.203 1.203 15 H -0.201 1.201 16 H 0.058 0.942 17 H 0.080 0.920 18 H 0.088 0.912 19 H 0.212 0.788 20 H 0.225 0.775 21 H 0.137 0.863 22 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.756 -0.455 1.177 2.162 hybrid contribution 0.140 1.148 0.068 1.159 sum -1.616 0.693 1.245 2.155 Atomic orbital electron populations 1.21107 0.77538 1.01750 1.00248 1.47940 1.03614 1.02898 1.68201 1.76840 0.98949 1.08197 1.43100 1.18809 0.87469 0.89827 0.94879 1.41163 1.04309 1.06440 1.89365 1.20698 0.96175 0.91272 1.39341 1.18605 0.88346 0.87464 0.89749 1.19585 1.02202 0.89783 1.45041 0.90761 1.26874 0.91645 1.06229 0.92707 1.70332 1.26259 1.27210 1.18511 0.83534 0.76915 0.72724 0.77159 1.19900 1.20320 1.20103 0.94156 0.92023 0.91168 0.78783 0.77477 0.86262 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 2.86 11.26 59.84 0.67 3.54 14 2 N -0.44 -11.61 4.09 -65.39 -0.27 -11.88 14 3 N -0.44 -11.83 12.56 31.22 0.39 -11.44 14 4 C 0.35 8.96 8.36 -154.69 -1.29 7.67 14 5 N -0.86 -17.29 9.15 31.21 0.29 -17.00 14 6 C -0.44 -12.40 8.85 -38.66 -0.34 -12.74 14 7 C 0.28 7.87 6.37 -84.02 -0.54 7.33 14 8 C -0.53 -14.44 8.78 -38.13 -0.33 -14.77 14 9 H 0.07 1.91 7.71 -52.49 -0.40 1.50 14 10 C 0.05 1.29 5.27 -17.29 -0.09 1.20 14 11 N -0.80 -21.85 12.63 55.56 0.70 -21.15 14 12 Si 1.07 21.77 29.99 -169.99 -5.10 16.67 14 13 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 14 H -0.28 -5.28 7.11 56.52 0.40 -4.87 14 15 H -0.28 -5.42 7.11 56.52 0.40 -5.02 14 16 H 0.04 0.77 8.14 -51.93 -0.42 0.35 14 17 H 0.06 1.16 8.14 -51.92 -0.42 0.74 14 18 H 0.07 1.38 7.69 -51.93 -0.40 0.98 14 19 H 0.39 6.78 8.96 -40.82 -0.37 6.41 14 20 H 0.40 6.94 8.96 -40.82 -0.37 6.58 14 21 H 0.12 3.37 6.91 -52.48 -0.36 3.01 14 22 H 0.31 8.71 6.26 -40.82 -0.26 8.46 14 LS Contribution 201.41 15.07 3.04 3.04 Total: -1.00 -31.86 201.41 -4.67 -36.53 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -1.79 Total: 13.02 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.92 Total: -7.77 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 1.11 Total: -61.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.10 Total: 16.67 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -31.86 -4.67 -36.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023613.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.153 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds