Wall clock time and date at job start Mon Mar 30 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40015 * 126.13999 * 2 1 4 4 C 1.31690 * 109.06003 * 180.02562 * 3 2 1 5 5 N 1.39900 * 125.54171 * 180.02562 * 4 3 2 6 6 C 1.39247 * 108.91852 * 359.73462 * 4 3 2 7 7 C 1.37522 * 126.14380 * 180.02562 * 2 1 3 8 8 C 1.40223 * 126.59732 * 359.96959 * 7 2 1 9 9 H 1.07998 * 119.99739 * 340.89700 * 8 7 2 10 10 C 1.40134 * 119.99850 * 160.89913 * 8 7 2 11 11 N 1.30772 * 120.00185 * 336.92210 * 10 8 7 12 12 Si 1.86801 * 120.00004 * 156.91613 * 10 8 7 13 13 H 1.48500 * 109.47412 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.46827 * 60.00117 * 12 10 8 15 15 H 1.48498 * 109.47138 * 300.00401 * 12 10 8 16 16 H 1.09001 * 109.47510 * 269.96079 * 1 2 3 17 17 H 1.09007 * 109.47477 * 29.95801 * 1 2 3 18 18 H 1.09007 * 109.47041 * 149.95900 * 1 2 3 19 19 H 0.96999 * 119.99694 * 359.97438 * 5 4 3 20 20 H 0.96999 * 120.00342 * 179.97438 * 5 4 3 21 21 H 1.08004 * 126.24912 * 180.29684 * 6 4 3 22 22 H 0.97001 * 120.00288 * 353.93090 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2907 1.1307 0.0000 4 6 3.5495 0.7439 -0.0006 5 7 4.6612 1.5932 -0.0002 6 6 3.5942 -0.6478 0.0052 7 6 2.2761 -1.1105 -0.0005 8 6 1.8601 -2.4496 -0.0005 9 1 0.8560 -2.7031 0.3060 10 6 2.7472 -3.4589 -0.3981 11 7 3.7599 -3.1711 -1.1738 12 14 2.4832 -5.2155 0.1799 13 1 3.5505 -6.0854 -0.3763 14 1 1.1588 -5.6969 -0.2885 15 1 2.5299 -5.2608 1.6634 16 1 -0.3634 -0.0007 1.0276 17 1 -0.3634 0.8904 -0.5132 18 1 -0.3633 -0.8897 -0.5145 19 1 4.5366 2.5552 0.0001 20 1 5.5566 1.2202 -0.0003 21 1 4.4853 -1.2581 0.0107 22 1 3.8482 -2.2794 -1.5453 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023613.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:54 Heat of formation + Delta-G solvation = 34.772000 kcal Electronic energy + Delta-G solvation = -9281.743092 eV Core-core repulsion = 7450.747897 eV Total energy + Delta-G solvation = -1830.995196 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.95023 -36.04255 -35.23942 -31.91383 -30.42317 -27.21740 -26.15717 -21.89046 -20.94838 -19.44237 -17.34957 -16.59720 -15.86430 -15.71478 -15.53585 -14.90633 -14.28133 -13.59455 -13.19133 -12.84020 -12.77715 -11.91043 -11.63546 -11.42557 -10.99938 -10.61927 -9.33479 -9.24797 -8.36229 -6.61498 1.33309 1.57450 1.85245 1.89124 2.16918 2.41028 2.52068 3.17693 3.36199 4.22547 4.56014 4.68455 5.00176 5.19095 5.32200 5.57903 5.94324 5.94382 6.16432 6.61697 6.95853 7.06396 7.18305 7.77567 8.09291 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.059017 B = 0.017606 C = 0.014129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.325711 B = 1589.980593 C = 1981.309213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.447 5.447 3 N -0.454 5.454 4 C 0.341 3.659 5 N -0.842 5.842 6 C -0.470 4.470 7 C 0.251 3.749 8 C -0.550 4.550 9 H 0.085 0.915 10 C 0.012 3.988 11 N -0.815 5.815 12 Si 1.129 2.871 13 H -0.273 1.273 14 H -0.253 1.253 15 H -0.265 1.265 16 H 0.058 0.942 17 H 0.080 0.920 18 H 0.079 0.921 19 H 0.401 0.599 20 H 0.410 0.590 21 H 0.106 0.894 22 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -0.465 1.685 2.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.238 5.238 3 N -0.288 5.288 4 C 0.085 3.915 5 N -0.395 5.395 6 C -0.502 4.502 7 C 0.131 3.869 8 C -0.585 4.585 9 H 0.103 0.897 10 C -0.206 4.206 11 N -0.439 5.439 12 Si 0.945 3.055 13 H -0.198 1.198 14 H -0.177 1.177 15 H -0.189 1.189 16 H 0.077 0.923 17 H 0.099 0.901 18 H 0.098 0.902 19 H 0.230 0.770 20 H 0.240 0.760 21 H 0.124 0.876 22 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.388 -0.960 1.600 3.031 hybrid contribution 0.336 1.410 -0.077 1.452 sum -2.052 0.450 1.524 2.595 Atomic orbital electron populations 1.21434 0.74824 1.03198 1.01868 1.48332 1.05306 1.02207 1.67926 1.76750 0.99408 1.08900 1.43782 1.19058 0.88477 0.89887 0.94102 1.41076 1.03518 1.06763 1.88119 1.20756 0.96014 0.92350 1.41039 1.19002 0.89165 0.88547 0.90230 1.19936 1.03188 0.89920 1.45486 0.89690 1.28550 0.90399 1.10198 0.91457 1.70454 1.27397 1.26120 1.19967 0.82871 0.78001 0.67442 0.77232 1.19757 1.17673 1.18946 0.92330 0.90089 0.90240 0.77032 0.75976 0.87636 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.16 11.26 127.77 1.44 6.60 14 2 N -0.45 -23.52 4.09 -360.80 -1.48 -25.00 14 3 N -0.45 -24.25 12.56 -55.13 -0.69 -24.94 14 4 C 0.34 17.59 8.36 132.99 1.11 18.71 14 5 N -0.84 -32.72 9.15 -55.17 -0.50 -33.22 14 6 C -0.47 -26.61 8.85 22.87 0.20 -26.40 14 7 C 0.25 14.26 6.37 39.09 0.25 14.51 14 8 C -0.55 -29.71 8.78 23.21 0.20 -29.51 14 9 H 0.09 4.27 7.71 -2.91 -0.02 4.25 14 10 C 0.01 0.64 5.27 85.31 0.45 1.09 14 11 N -0.82 -44.97 12.63 21.86 0.28 -44.70 14 12 Si 1.13 42.32 29.99 68.60 2.06 44.37 14 13 H -0.27 -10.11 7.11 99.48 0.71 -9.40 14 14 H -0.25 -8.45 7.11 99.48 0.71 -7.74 14 15 H -0.26 -9.43 7.11 99.48 0.71 -8.72 14 16 H 0.06 2.12 8.14 -2.39 -0.02 2.10 14 17 H 0.08 2.89 8.14 -2.38 -0.02 2.87 14 18 H 0.08 3.00 7.69 -2.38 -0.02 2.98 14 19 H 0.40 13.35 8.96 -92.71 -0.83 12.52 14 20 H 0.41 13.83 8.96 -92.71 -0.83 13.00 14 21 H 0.11 6.13 6.91 -2.91 -0.02 6.11 14 22 H 0.29 16.83 6.26 -92.71 -0.58 16.25 14 Total: -1.00 -67.37 201.41 3.10 -64.28 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.22 Total: 34.22 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 3.66 Total: -15.01 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -2.40 Total: -127.86 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.06 Total: 44.37 kcal Total: -67.37 3.10 -64.28 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023613.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.049 kcal (2) G-P(sol) polarization free energy of solvation -67.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds