Wall clock time and date at job start Mon Mar 30 2020 01:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00000 * 2 1 4 4 H 1.48500 * 109.47105 * 239.99743 * 3 2 1 5 5 H 1.48497 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46978 * 120.00103 * 3 2 1 7 7 C 1.37880 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00131 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.09002 * 115.58629 * 325.78996 * 9 7 2 11 11 C 1.53145 * 117.51400 * 111.58265 * 9 7 2 12 12 C 1.52301 * 59.82026 * 107.43762 * 11 9 7 13 13 C 1.54158 * 121.23006 * 110.42955 * 12 11 9 14 14 C 1.55096 * 102.62520 * 165.47446 * 13 12 11 15 15 N 1.48597 * 103.48496 * 323.36891 * 14 13 12 16 16 C 1.48086 * 105.86952 * 38.75835 * 15 14 13 17 17 H 0.96997 * 120.00304 * 359.97438 * 1 2 3 18 18 H 1.09000 * 117.52069 * 0.02562 * 11 9 7 19 19 H 1.09008 * 117.55177 * 214.85552 * 11 9 7 20 20 H 1.08992 * 110.69445 * 47.24767 * 13 12 11 21 21 H 1.09002 * 110.91170 * 283.79609 * 13 12 11 22 22 H 1.09002 * 110.64627 * 204.82260 * 14 13 12 23 23 H 1.08996 * 110.64440 * 81.91609 * 14 13 12 24 24 H 1.00902 * 110.99536 * 159.30314 * 15 14 13 25 25 H 1.08998 * 110.00749 * 94.11623 * 16 15 14 26 26 H 1.08998 * 110.00336 * 215.42490 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.3113 -2.5002 0.5529 11 6 1.3304 -3.3620 -1.2623 12 6 2.0690 -3.7840 0.0011 13 6 1.6196 -5.0124 0.8170 14 6 2.8389 -5.2707 1.7401 15 7 4.0030 -4.9457 0.8756 16 6 3.6004 -3.7617 0.0826 17 1 -0.4850 0.8400 0.0004 18 1 1.9280 -2.9857 -2.0926 19 1 0.4433 -3.9310 -1.5408 20 1 1.4428 -5.8658 0.1625 21 1 0.7309 -4.7846 1.4055 22 1 2.8709 -6.3148 2.0514 23 1 2.8095 -4.6128 2.6086 24 1 4.8217 -4.7476 1.4311 25 1 3.9342 -2.8499 0.5780 26 1 4.0285 -3.8200 -0.9181 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261027565.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:35 Heat of formation + Delta-G solvation = 17.918817 kcal Electronic energy + Delta-G solvation = -9499.029389 eV Core-core repulsion = 7770.843728 eV Total energy + Delta-G solvation = -1728.185661 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.32171 -34.31780 -32.03883 -28.80504 -25.98660 -24.95268 -20.96818 -20.48259 -18.03316 -16.23466 -15.77724 -14.62742 -14.42861 -13.18287 -12.89057 -12.54892 -11.74246 -11.56354 -11.35748 -11.01529 -10.86847 -10.84475 -10.25253 -10.03212 -9.44301 -9.01779 -8.39520 -8.27477 -7.90278 -6.10839 -4.10152 3.27504 3.32500 3.34772 4.35916 4.80399 4.98136 5.35433 5.46445 5.53583 5.83894 6.01456 6.27232 6.41458 6.46270 6.57448 6.64093 6.78127 6.92003 6.94767 7.16904 7.41768 7.60324 7.80749 7.87159 8.40841 8.90788 9.49963 10.99793 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.068259 B = 0.014287 C = 0.013059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.101595 B = 1959.402182 C = 2143.527900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.496 4.496 8 H 0.060 0.940 9 C 0.049 3.951 10 H 0.076 0.924 11 C -0.194 4.194 12 C -0.174 4.174 13 C -0.084 4.084 14 C 0.042 3.958 15 N -0.678 5.678 16 C 0.085 3.915 17 H 0.263 0.737 18 H 0.076 0.924 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.038 0.962 24 H 0.327 0.673 25 H 0.049 0.951 26 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -5.438 2.015 7.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.030 3.970 10 H 0.094 0.906 11 C -0.233 4.233 12 C -0.175 4.175 13 C -0.122 4.122 14 C -0.087 4.087 15 N -0.306 5.306 16 C -0.044 4.044 17 H 0.073 0.927 18 H 0.095 0.905 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.141 0.859 25 H 0.068 0.932 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.737 -5.814 1.498 7.072 hybrid contribution 0.449 1.571 0.542 1.722 sum 4.186 -4.242 2.040 6.300 Atomic orbital electron populations 1.69954 1.06111 1.27012 1.49251 1.25033 0.94862 0.99298 0.94429 0.86608 0.79607 0.82759 0.78760 1.20043 1.21107 1.20136 1.20621 0.92663 0.89372 1.50646 0.92166 1.19931 0.95649 0.87539 0.93870 0.90575 1.22996 1.00516 1.07058 0.92688 1.21849 0.92903 0.99354 1.03411 1.21931 0.96459 0.96956 0.96853 1.22942 0.91361 0.99552 0.94862 1.63143 1.05454 1.37040 1.24980 1.21906 0.94336 0.90656 0.97503 0.92698 0.90514 0.91652 0.92092 0.91825 0.91289 0.94314 0.85897 0.93246 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.13 55.43 0.73 -25.16 15 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 15 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.50 -13.72 8.76 -34.44 -0.30 -14.02 15 8 H 0.06 1.63 6.32 -52.49 -0.33 1.30 15 9 C 0.05 1.26 5.44 -92.05 -0.50 0.76 15 10 H 0.08 2.12 7.90 -51.93 -0.41 1.71 15 11 C -0.19 -4.53 10.00 -27.01 -0.27 -4.80 15 12 C -0.17 -3.82 2.44 -154.42 -0.38 -4.20 15 13 C -0.08 -1.58 6.85 -25.02 -0.17 -1.75 15 14 C 0.04 0.70 7.55 -1.78 -0.01 0.69 15 15 N -0.68 -11.84 7.52 -110.16 -0.83 -12.67 15 16 C 0.08 1.71 6.82 -2.97 -0.02 1.69 15 17 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 18 H 0.08 1.80 8.14 -51.93 -0.42 1.37 15 19 H 0.06 1.43 8.14 -51.92 -0.42 1.01 15 20 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 21 H 0.06 1.17 8.12 -51.93 -0.42 0.75 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.33 4.93 8.92 -39.29 -0.35 4.58 15 25 H 0.05 1.05 6.60 -51.93 -0.34 0.71 15 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 15 LS Contribution 219.84 15.07 3.31 3.31 Total: -1.00 -28.75 219.84 -7.09 -35.84 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.53 Total: 2.38 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -1.75 Total: -19.86 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.10 Total: -37.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.75 -7.09 -35.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027565.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.759 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds