Wall clock time and date at job start Mon Mar 30 2020 01:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00000 * 2 1 4 4 H 1.48500 * 109.47105 * 239.99743 * 3 2 1 5 5 H 1.48497 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46978 * 120.00103 * 3 2 1 7 7 C 1.37880 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00131 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.09002 * 115.58629 * 325.78996 * 9 7 2 11 11 C 1.53145 * 117.51400 * 111.58265 * 9 7 2 12 12 C 1.52301 * 59.82026 * 107.43762 * 11 9 7 13 13 C 1.54158 * 121.23006 * 110.42955 * 12 11 9 14 14 C 1.55096 * 102.62520 * 165.47446 * 13 12 11 15 15 N 1.48597 * 103.48496 * 323.36891 * 14 13 12 16 16 C 1.48086 * 105.86952 * 38.75835 * 15 14 13 17 17 H 0.96997 * 120.00304 * 359.97438 * 1 2 3 18 18 H 1.09000 * 117.52069 * 0.02562 * 11 9 7 19 19 H 1.09008 * 117.55177 * 214.85552 * 11 9 7 20 20 H 1.08992 * 110.69445 * 47.24767 * 13 12 11 21 21 H 1.09002 * 110.91170 * 283.79609 * 13 12 11 22 22 H 1.09002 * 110.64627 * 204.82260 * 14 13 12 23 23 H 1.08996 * 110.64440 * 81.91609 * 14 13 12 24 24 H 1.00902 * 110.99536 * 159.30314 * 15 14 13 25 25 H 1.08998 * 110.00749 * 94.11623 * 16 15 14 26 26 H 1.08998 * 110.00336 * 215.42490 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.3113 -2.5002 0.5529 11 6 1.3304 -3.3620 -1.2623 12 6 2.0690 -3.7840 0.0011 13 6 1.6196 -5.0124 0.8170 14 6 2.8389 -5.2707 1.7401 15 7 4.0030 -4.9457 0.8756 16 6 3.6004 -3.7617 0.0826 17 1 -0.4850 0.8400 0.0004 18 1 1.9280 -2.9857 -2.0926 19 1 0.4433 -3.9310 -1.5408 20 1 1.4428 -5.8658 0.1625 21 1 0.7309 -4.7846 1.4055 22 1 2.8709 -6.3148 2.0514 23 1 2.8095 -4.6128 2.6086 24 1 4.8217 -4.7476 1.4311 25 1 3.9342 -2.8499 0.5780 26 1 4.0285 -3.8200 -0.9181 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027565.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:35 Heat of formation + Delta-G solvation = -1.462323 kcal Electronic energy + Delta-G solvation = -9499.869818 eV Core-core repulsion = 7770.843728 eV Total energy + Delta-G solvation = -1729.026090 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.98920 -36.05789 -34.07236 -30.31544 -27.89817 -26.75424 -22.47968 -22.40960 -19.77361 -18.28044 -17.38788 -16.34083 -16.11452 -15.06302 -14.51986 -14.32233 -13.50466 -13.10961 -13.01815 -12.83280 -12.76545 -12.34731 -12.16129 -11.76384 -11.36023 -11.05396 -10.33725 -10.10874 -9.42081 -8.21519 -6.27044 1.39888 1.41632 1.49983 2.38285 2.95202 3.40129 3.47768 3.84095 4.05586 4.37402 4.42685 4.65116 4.83309 4.87962 4.90865 5.01654 5.10405 5.15381 5.19901 5.44590 5.52524 5.75107 5.85721 6.32348 6.50380 6.79369 7.35988 8.89967 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.068259 B = 0.014287 C = 0.013059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.101595 B = 1959.402182 C = 2143.527900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.012 3.988 10 H 0.046 0.954 11 C -0.192 4.192 12 C -0.158 4.158 13 C -0.086 4.086 14 C 0.046 3.954 15 N -0.672 5.672 16 C 0.087 3.913 17 H 0.264 0.736 18 H 0.071 0.929 19 H 0.076 0.924 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.102 0.898 23 H 0.038 0.962 24 H 0.344 0.656 25 H 0.035 0.965 26 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.320 -6.169 2.333 8.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.080 0.920 9 C -0.007 4.007 10 H 0.064 0.936 11 C -0.230 4.230 12 C -0.158 4.158 13 C -0.124 4.124 14 C -0.083 4.083 15 N -0.301 5.301 16 C -0.042 4.042 17 H 0.073 0.927 18 H 0.090 0.910 19 H 0.095 0.905 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.120 0.880 23 H 0.057 0.943 24 H 0.160 0.840 25 H 0.054 0.946 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.062 -6.561 1.825 8.485 hybrid contribution 0.029 1.722 0.449 1.780 sum 5.090 -4.839 2.274 7.382 Atomic orbital electron populations 1.70083 1.07691 1.27868 1.50731 1.25899 0.95708 1.02964 0.94192 0.85536 0.78328 0.78260 0.79124 1.19300 1.20713 1.19241 1.20946 0.92905 0.90538 1.50334 0.92020 1.19779 0.95669 0.89104 0.96110 0.93612 1.22949 1.01311 1.06358 0.92367 1.21956 0.93932 0.98186 1.01766 1.22013 0.97537 0.95761 0.97110 1.23012 0.89756 1.01530 0.94043 1.63136 1.06345 1.35137 1.25514 1.21802 0.92950 0.91352 0.98089 0.92676 0.90995 0.90532 0.90617 0.91930 0.88024 0.94340 0.84045 0.94638 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 13.13 21.45 0.28 -54.94 15 2 C 0.01 0.65 5.46 84.66 0.46 1.11 15 3 Si 0.96 43.60 29.54 68.60 2.03 45.63 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 15 7 C -0.51 -28.57 8.76 25.60 0.22 -28.34 15 8 H 0.06 3.34 6.32 -2.91 -0.02 3.33 15 9 C 0.01 0.63 5.44 -11.72 -0.06 0.57 15 10 H 0.05 2.65 7.90 -2.39 -0.02 2.63 15 11 C -0.19 -8.91 10.00 30.41 0.30 -8.61 15 12 C -0.16 -6.76 2.44 -52.12 -0.13 -6.89 15 13 C -0.09 -3.06 6.85 31.70 0.22 -2.84 15 14 C 0.05 1.37 7.55 86.69 0.65 2.03 15 15 N -0.67 -21.39 7.52 -502.42 -3.78 -25.17 15 16 C 0.09 3.39 6.82 86.20 0.59 3.98 15 17 H 0.26 14.86 8.31 -92.71 -0.77 14.09 15 18 H 0.07 3.36 8.14 -2.39 -0.02 3.34 15 19 H 0.08 3.32 8.14 -2.38 -0.02 3.30 15 20 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 21 H 0.06 2.22 8.12 -2.39 -0.02 2.20 15 22 H 0.10 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 24 H 0.34 9.25 8.92 -89.69 -0.80 8.45 15 25 H 0.04 1.48 6.60 -2.39 -0.02 1.46 15 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -60.98 219.84 1.15 -59.83 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.36 Total: 13.65 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 2.26 Total: -38.99 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.50 Total: -80.11 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -60.98 1.15 -59.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027565.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.367 kcal (2) G-P(sol) polarization free energy of solvation -60.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds