Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37447 * 120.00454 * 2 1 4 4 N 1.32308 * 126.24378 * 179.97438 * 3 2 1 5 5 N 1.28519 * 110.20600 * 180.02562 * 4 3 2 6 6 C 1.33060 * 109.70744 * 359.97438 * 5 4 3 7 7 C 1.39825 * 126.57169 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99404 * 180.02562 * 7 6 5 9 9 C 1.40118 * 120.00152 * 0.02842 * 7 6 5 10 10 N 1.30794 * 120.00093 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99897 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47155 * 90.00074 * 11 9 7 13 13 H 1.48505 * 109.46899 * 209.99661 * 11 9 7 14 14 H 1.48499 * 109.47123 * 329.99485 * 11 9 7 15 15 N 1.36492 * 126.23679 * 0.31941 * 3 2 1 16 16 H 0.96999 * 127.14393 * 359.97438 * 15 3 2 17 17 H 1.09003 * 109.46874 * 300.00285 * 1 2 3 18 18 H 1.09005 * 109.46974 * 59.99682 * 1 2 3 19 19 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 20 20 H 0.97006 * 119.99677 * 180.02562 * 2 1 3 21 21 H 0.96998 * 120.00136 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1523 1.1903 0.0000 4 7 3.4676 1.3341 0.0005 5 7 3.7777 2.5813 0.0009 6 6 2.6704 3.3190 0.0001 7 6 2.5997 4.7155 -0.0003 8 1 1.6383 5.2074 -0.0005 9 6 3.7762 5.4766 -0.0005 10 7 4.9406 4.8807 0.0002 11 14 3.6817 7.3422 -0.0003 12 1 3.6570 7.8364 1.3998 13 1 4.8676 7.8979 -0.7005 14 1 2.4456 7.7753 -0.7001 15 7 1.6024 2.4395 0.0061 16 1 0.6588 2.6641 0.0110 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 1.9500 -0.8401 -0.0004 21 1 5.7550 5.4076 -0.0003 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261088870.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = 48.792452 kcal Electronic energy + Delta-G solvation = -9276.888152 eV Core-core repulsion = 7381.075017 eV Total energy + Delta-G solvation = -1895.813134 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.40646 -36.67554 -35.29226 -33.49293 -30.56674 -28.07635 -25.78466 -22.58208 -22.12922 -19.75756 -18.07453 -16.96427 -16.62700 -16.15001 -15.42784 -14.76741 -14.41085 -13.21382 -12.99541 -12.88274 -12.86284 -11.94783 -11.52498 -11.47549 -10.94720 -10.62770 -10.22024 -8.61152 -8.39718 -6.36355 1.40114 1.46430 1.62945 1.90086 2.07615 2.34117 2.68288 3.17762 3.48290 4.40664 4.63974 4.85326 5.02021 5.04915 5.36292 5.55068 5.84506 6.37090 6.53691 6.92960 6.99464 7.34817 8.57583 8.97695 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.110708 B = 0.013264 C = 0.011922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 252.856838 B = 2110.408393 C = 2348.119455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.714 5.714 3 C 0.368 3.632 4 N -0.413 5.413 5 N -0.388 5.388 6 C 0.303 3.697 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.026 3.974 10 N -0.798 5.798 11 Si 1.006 2.994 12 H -0.263 1.263 13 H -0.273 1.273 14 H -0.250 1.250 15 N -0.642 5.642 16 H 0.418 0.582 17 H 0.045 0.955 18 H 0.045 0.955 19 H 0.115 0.885 20 H 0.419 0.581 21 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 -1.580 -0.009 10.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.363 5.363 3 C 0.008 3.992 4 N -0.260 5.260 5 N -0.231 5.231 6 C 0.052 3.948 7 C -0.523 4.523 8 H 0.117 0.883 9 C -0.193 4.193 10 N -0.424 5.424 11 Si 0.826 3.174 12 H -0.188 1.188 13 H -0.198 1.198 14 H -0.173 1.173 15 N -0.269 5.269 16 H 0.257 0.743 17 H 0.063 0.937 18 H 0.063 0.937 19 H 0.133 0.867 20 H 0.256 0.744 21 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.198 -1.966 -0.009 8.430 hybrid contribution -1.437 0.637 0.013 1.572 sum -9.635 -1.329 0.004 9.726 Atomic orbital electron populations 1.21669 0.77580 1.04874 1.00396 1.42573 1.05897 1.01521 1.86321 1.21094 0.89732 0.82224 1.06102 1.74367 1.08185 1.14840 1.28582 1.75293 1.21768 0.94324 1.31676 1.21640 0.81372 0.93261 0.98489 1.18502 0.95681 0.86586 1.51563 0.88325 1.26906 0.93642 1.06495 0.92227 1.70178 0.99191 1.39585 1.33460 0.84869 0.79162 0.74132 0.79284 1.18790 1.19794 1.17323 1.43749 1.09768 1.05031 1.68331 0.74272 0.93651 0.93664 0.86702 0.74393 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.24 10.80 127.77 1.38 3.62 14 2 N -0.71 -24.14 5.82 -370.30 -2.16 -26.29 14 3 C 0.37 17.55 8.95 260.18 2.33 19.88 14 4 N -0.41 -24.24 12.25 -58.11 -0.71 -24.95 14 5 N -0.39 -25.06 10.48 -55.01 -0.58 -25.64 14 6 C 0.30 17.70 7.73 133.25 1.03 18.73 14 7 C -0.48 -26.60 9.44 23.11 0.22 -26.38 14 8 H 0.10 4.81 7.85 -2.91 -0.02 4.79 14 9 C 0.03 1.41 5.50 85.30 0.47 1.87 14 10 N -0.80 -47.01 11.94 21.86 0.26 -46.74 14 11 Si 1.01 39.21 29.56 68.60 2.03 41.23 14 12 H -0.26 -9.83 7.11 99.48 0.71 -9.13 14 13 H -0.27 -10.34 7.11 99.48 0.71 -9.64 14 14 H -0.25 -9.02 7.11 99.48 0.71 -8.31 14 15 N -0.64 -30.47 6.16 -193.45 -1.19 -31.66 14 16 H 0.42 16.01 8.62 -92.71 -0.80 15.21 14 17 H 0.04 1.01 8.14 -2.39 -0.02 0.99 14 18 H 0.04 1.01 8.14 -2.38 -0.02 0.99 14 19 H 0.11 1.65 8.14 -2.39 -0.02 1.63 14 20 H 0.42 12.68 8.95 -92.70 -0.83 11.85 14 21 H 0.28 14.94 8.30 -92.71 -0.77 14.17 14 Total: -1.00 -76.48 198.09 2.72 -73.76 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.36 Total: 22.56 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.43 Total: 17.73 kcal Atomic # 7 Polarization: -150.92 SS G_CDS: -4.38 Total: -155.29 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Total: -76.48 2.72 -73.76 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088870.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.557 kcal (2) G-P(sol) polarization free energy of solvation -76.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds