Wall clock time and date at job start Mon Mar 30 2020 01:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.48559 * 110.99760 * 170.00062 * 10 9 7 12 12 C 1.54383 * 104.59525 * 200.95612 * 11 10 9 13 13 H 1.08991 * 117.60992 * 244.71672 * 12 11 10 14 14 C 1.53008 * 118.12418 * 89.19631 * 12 11 10 15 15 C 1.54261 * 105.05649 * 23.85469 * 12 11 10 16 16 H 1.09001 * 121.78701 * 222.12465 * 15 12 11 17 17 C 1.48561 * 111.00180 * 54.58135 * 10 9 7 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 20 20 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 21 21 H 1.08999 * 110.41173 * 319.73710 * 11 10 9 22 22 H 1.08999 * 110.41234 * 82.18369 * 11 10 9 23 23 H 1.08998 * 117.44225 * 15.97681 * 14 12 11 24 24 H 1.09002 * 117.43919 * 160.73258 * 14 12 11 25 25 H 1.08998 * 110.40798 * 277.81601 * 17 10 9 26 26 H 1.08996 * 110.40761 * 40.25725 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5133 -4.9078 0.2426 12 6 2.6229 -5.8557 0.7464 13 1 2.8763 -6.7130 0.1230 14 6 2.8970 -5.9100 2.2507 15 6 3.7073 -4.9278 1.3319 16 1 4.7687 -5.1027 1.1560 17 6 3.1618 -3.4975 1.1327 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6241 -2.5566 0.8903 20 1 0.6247 -2.5571 -0.8897 21 1 0.7407 -4.7892 1.0023 22 1 1.0818 -5.2863 -0.6839 23 1 2.1394 -5.4938 2.9147 24 1 3.4294 -6.7809 2.6331 25 1 3.9713 -2.8141 0.8762 26 1 2.6471 -3.1582 2.0316 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261117058.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:22 Heat of formation + Delta-G solvation = 31.046202 kcal Electronic energy + Delta-G solvation = -9482.027203 eV Core-core repulsion = 7754.410788 eV Total energy + Delta-G solvation = -1727.616415 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.06317 -34.26771 -32.09229 -27.89761 -26.75895 -23.71908 -21.40183 -20.15205 -19.63013 -16.61337 -15.99411 -14.36830 -13.74918 -13.63811 -13.35130 -12.45924 -12.26042 -11.54408 -11.34141 -10.98489 -10.82496 -10.72383 -10.27211 -10.09038 -9.71484 -9.52368 -8.59301 -8.41043 -7.46340 -6.38752 -4.07856 3.43573 3.48133 3.63966 3.86312 4.52104 4.75410 5.02699 5.07169 5.37190 5.47250 5.53596 5.66474 5.90755 6.07558 6.18616 6.29589 6.47417 6.58059 6.65914 6.92598 7.11018 7.60253 7.94812 8.27042 8.54855 8.84948 9.63707 11.00981 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.089049 B = 0.012518 C = 0.011570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.357073 B = 2236.275494 C = 2419.368766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 1.076 2.924 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.594 4.594 8 H 0.058 0.942 9 C 0.170 3.830 10 N -0.505 5.505 11 C 0.055 3.945 12 C -0.162 4.162 13 H 0.107 0.893 14 C -0.161 4.161 15 C -0.167 4.167 16 H 0.112 0.888 17 C 0.080 3.920 18 H 0.267 0.733 19 H -0.018 1.018 20 H 0.024 0.976 21 H 0.035 0.965 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -8.344 2.962 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.904 3.096 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.633 4.633 8 H 0.076 0.924 9 C 0.044 3.956 10 N -0.229 5.229 11 C -0.073 4.073 12 C -0.180 4.180 13 H 0.125 0.875 14 C -0.199 4.199 15 C -0.186 4.186 16 H 0.130 0.870 17 C -0.047 4.047 18 H 0.077 0.923 19 H 0.000 1.000 20 H 0.042 0.958 21 H 0.053 0.947 22 H 0.093 0.907 23 H 0.107 0.893 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.155 -6.650 2.405 8.751 hybrid contribution -0.299 -1.762 0.720 1.927 sum 4.856 -8.412 3.125 10.204 Atomic orbital electron populations 1.70766 1.06906 1.30455 1.46859 1.25884 0.96495 1.02797 0.93752 0.83450 0.74686 0.74798 0.76710 1.21483 1.21338 1.20950 1.22033 0.94808 0.91045 1.55366 0.92408 1.20007 0.91244 0.89328 0.95014 1.65533 1.15608 1.01510 1.40237 1.22655 0.94305 0.91074 0.99248 1.23401 0.99182 1.00427 0.95036 0.87457 1.23658 1.02630 1.00883 0.92693 1.24233 0.96564 0.93076 1.04721 0.87021 1.22357 0.96691 0.92618 0.93075 0.92267 0.99997 0.95837 0.94664 0.90725 0.89265 0.88658 0.89921 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.65 55.43 0.76 -27.57 15 2 C 0.01 0.42 5.46 -17.82 -0.10 0.33 15 3 Si 1.08 25.68 29.90 -169.99 -5.08 20.59 15 4 H -0.29 -6.60 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.59 -17.30 8.58 -34.44 -0.30 -17.59 15 8 H 0.06 1.67 6.64 -52.48 -0.35 1.32 15 9 C 0.17 4.61 4.13 -4.98 -0.02 4.59 15 10 N -0.50 -11.72 5.48 -231.41 -1.27 -12.99 15 11 C 0.06 1.07 6.29 -2.18 -0.01 1.06 15 12 C -0.16 -2.60 6.99 -89.23 -0.62 -3.22 15 13 H 0.11 1.52 8.14 -51.93 -0.42 1.10 15 14 C -0.16 -2.31 10.30 -24.55 -0.25 -2.57 15 15 C -0.17 -2.78 7.29 -87.06 -0.63 -3.42 15 16 H 0.11 1.65 8.14 -51.93 -0.42 1.23 15 17 C 0.08 1.69 5.37 -2.18 -0.01 1.67 15 18 H 0.27 8.27 7.22 -40.82 -0.29 7.98 15 19 H -0.02 -0.50 7.74 -51.93 -0.40 -0.90 15 20 H 0.02 0.67 8.01 -51.93 -0.42 0.26 15 21 H 0.04 0.69 7.81 -51.93 -0.41 0.29 15 22 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 23 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.10 1.12 8.14 -51.93 -0.42 0.69 15 25 H 0.08 1.78 7.21 -51.93 -0.37 1.41 15 26 H 0.04 0.88 8.00 -51.93 -0.42 0.47 15 LS Contribution 218.09 15.07 3.29 3.29 Total: -1.00 -31.00 218.09 -7.82 -38.82 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -3.57 Total: -2.99 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -1.95 Total: -19.16 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.51 Total: -40.56 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -31.00 -7.82 -38.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117058.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.869 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds