Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36784 * 119.99929 * 2 1 4 4 H 1.08001 * 119.99985 * 151.18578 * 3 2 1 5 5 C 1.38747 * 119.99839 * 331.18387 * 3 2 1 6 6 N 1.31640 * 120.00092 * 331.67930 * 5 3 2 7 7 Si 1.86795 * 119.99844 * 151.95818 * 5 3 2 8 8 H 1.48502 * 109.47102 * 179.72154 * 7 5 3 9 9 H 1.48499 * 109.47264 * 299.72516 * 7 5 3 10 10 H 1.48502 * 109.47305 * 59.72335 * 7 5 3 11 11 C 1.40045 * 120.00488 * 180.02562 * 2 1 3 12 12 C 1.40442 * 126.14479 * 179.68430 * 11 2 1 13 13 N 1.30791 * 108.20120 * 179.87879 * 12 11 2 14 14 N 1.40045 * 108.41585 * 0.38410 * 13 12 11 15 15 H 0.97005 * 125.97398 * 179.73440 * 14 13 12 16 16 C 1.35204 * 108.04449 * 359.75407 * 14 13 12 17 17 H 1.09004 * 109.47585 * 94.36188 * 1 2 3 18 18 H 1.09001 * 109.47006 * 214.35916 * 1 2 3 19 19 H 1.09007 * 109.46972 * 334.35947 * 1 2 3 20 20 H 0.97003 * 119.99917 * 354.17023 * 6 5 3 21 21 H 1.08000 * 125.89767 * 0.02562 * 12 11 2 22 22 H 1.08005 * 126.19156 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1488 1.1846 0.0000 4 1 3.1286 1.2425 0.4508 5 6 1.5839 2.3118 -0.5792 6 7 0.7264 2.1833 -1.5696 7 14 2.0461 4.0119 0.0414 8 1 1.3155 5.0403 -0.7420 9 1 1.6819 4.1311 1.4761 10 1 3.5086 4.2159 -0.1165 11 6 2.1653 -1.2128 -0.0005 12 6 3.5616 -1.3630 -0.0069 13 7 3.8349 -2.6420 -0.0026 14 7 2.6280 -3.3523 -0.0023 15 1 2.5351 -4.3179 -0.0032 16 6 1.6150 -2.4568 -0.0011 17 1 -0.3634 -0.0782 -1.0247 18 1 -0.3633 -0.8484 0.5800 19 1 -0.3633 0.9265 0.4447 20 1 0.5533 1.3082 -1.9509 21 1 4.2848 -0.5609 -0.0118 22 1 0.5599 -2.6875 -0.0002 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130899.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = 68.044473 kcal Electronic energy + Delta-G solvation = -9315.610162 eV Core-core repulsion = 7486.057769 eV Total energy + Delta-G solvation = -1829.552393 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.73723 -37.77406 -33.50462 -32.06881 -29.51999 -28.24460 -24.83033 -22.56010 -20.99920 -19.81400 -18.35903 -16.29390 -15.86764 -15.56352 -15.33435 -15.03729 -14.53157 -13.46912 -13.35961 -12.82487 -12.49535 -11.88768 -11.68762 -11.61686 -11.12165 -10.36178 -10.29052 -8.66151 -8.05748 -5.57268 1.09852 1.60807 1.64774 1.87390 2.19455 2.25193 2.59872 3.13126 3.41067 4.21313 4.31772 4.53284 4.75766 4.90431 4.97395 5.07974 5.56204 5.87479 6.21493 6.72609 6.81704 7.01886 7.62216 7.93879 8.76785 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.082742 B = 0.015216 C = 0.013571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.318830 B = 1839.683998 C = 2062.679205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.507 5.507 3 C -0.394 4.394 4 H 0.064 0.936 5 C -0.050 4.050 6 N -0.918 5.918 7 Si 1.118 2.882 8 H -0.288 1.288 9 H -0.275 1.275 10 H -0.272 1.272 11 C 0.050 3.950 12 C -0.007 4.007 13 N -0.302 5.302 14 N -0.463 5.463 15 H 0.451 0.549 16 C -0.072 4.072 17 H 0.016 0.984 18 H 0.065 0.935 19 H 0.042 0.958 20 H 0.258 0.742 21 H 0.170 0.830 22 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -5.806 3.582 6.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.213 5.213 3 C -0.523 4.523 4 H 0.082 0.918 5 C -0.250 4.250 6 N -0.555 5.555 7 Si 0.941 3.059 8 H -0.214 1.214 9 H -0.201 1.201 10 H -0.197 1.197 11 C -0.061 4.061 12 C -0.196 4.196 13 N -0.129 5.129 14 N -0.181 5.181 15 H 0.297 0.703 16 C -0.222 4.222 17 H 0.034 0.966 18 H 0.083 0.917 19 H 0.060 0.940 20 H 0.068 0.932 21 H 0.187 0.813 22 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.397 -4.848 3.411 5.940 hybrid contribution -0.443 -1.410 -0.097 1.482 sum -0.046 -6.258 3.313 7.081 Atomic orbital electron populations 1.21182 0.81438 1.00416 0.98627 1.41590 1.02694 1.00709 1.76268 1.20197 1.05479 0.88383 1.38228 0.91838 1.27445 0.97418 1.06656 0.93453 1.70932 1.37931 1.26523 1.20114 0.82844 0.76475 0.70786 0.75836 1.21355 1.20065 1.19733 1.18575 0.91846 0.87880 1.07788 1.23477 0.95201 0.94038 1.06836 1.76842 1.06838 1.04757 1.24415 1.45416 1.02227 1.08643 1.61856 0.70320 1.21666 0.95120 0.87949 1.17515 0.96571 0.91697 0.93956 0.93175 0.81306 0.79476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.83 8.69 127.77 1.11 6.94 14 2 N -0.51 -25.93 2.95 -536.01 -1.58 -27.52 14 3 C -0.39 -21.80 8.97 84.04 0.75 -21.05 14 4 H 0.06 3.51 7.22 -2.91 -0.02 3.49 14 5 C -0.05 -2.74 4.64 84.84 0.39 -2.35 14 6 N -0.92 -53.82 12.86 21.64 0.28 -53.54 14 7 Si 1.12 48.59 30.00 68.60 2.06 50.64 14 8 H -0.29 -12.64 7.11 99.48 0.71 -11.93 14 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 14 10 H -0.27 -11.04 7.11 99.48 0.71 -10.34 14 11 C 0.05 2.30 6.64 37.85 0.25 2.55 14 12 C -0.01 -0.32 11.23 85.38 0.96 0.64 14 13 N -0.30 -12.12 12.68 -56.67 -0.72 -12.84 14 14 N -0.46 -15.35 7.36 -57.00 -0.42 -15.77 14 15 H 0.45 10.59 8.96 -213.35 -1.91 8.67 14 16 C -0.07 -2.65 11.14 83.66 0.93 -1.72 14 17 H 0.02 0.76 6.96 -2.38 -0.02 0.74 14 18 H 0.06 2.43 7.09 -2.39 -0.02 2.41 14 19 H 0.04 2.04 7.46 -2.38 -0.02 2.02 14 20 H 0.26 15.51 6.56 -92.71 -0.61 14.90 14 21 H 0.17 7.48 7.48 -2.91 -0.02 7.46 14 22 H 0.19 5.63 7.36 -2.91 -0.02 5.60 14 Total: -1.00 -65.00 197.56 3.50 -61.50 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.52 Total: 12.50 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.40 Total: -14.98 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -2.44 Total: -109.66 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.06 Total: 50.64 kcal Total: -65.00 3.50 -61.50 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130899.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.548 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds