Wall clock time and date at job start Mon Mar 30 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48102 * 110.99753 * 2 1 4 4 C 1.53284 * 85.92508 * 222.87956 * 3 2 1 5 5 C 1.52479 * 128.83451 * 243.46160 * 4 3 2 6 6 C 1.52337 * 128.80761 * 163.14745 * 4 3 2 7 7 H 1.09002 * 117.51568 * 10.43526 * 6 4 3 8 8 C 1.50702 * 117.51593 * 225.35910 * 6 4 3 9 9 H 1.08001 * 120.00244 * 0.16932 * 8 6 4 10 10 C 1.37875 * 119.99565 * 180.16381 * 8 6 4 11 11 N 1.31516 * 120.00365 * 0.02562 * 10 8 6 12 12 Si 1.86811 * 119.99584 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47034 * 90.00393 * 12 10 8 14 14 H 1.48501 * 109.46756 * 210.00245 * 12 10 8 15 15 H 1.48498 * 109.47048 * 329.99725 * 12 10 8 16 16 C 1.48105 * 110.99759 * 260.41925 * 2 1 3 17 17 H 1.08997 * 109.47570 * 59.99336 * 1 2 3 18 18 H 1.08999 * 109.47200 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.46649 * 299.99884 * 1 2 3 20 20 H 1.08996 * 113.79914 * 108.62700 * 3 2 1 21 21 H 1.09003 * 113.80222 * 337.13011 * 3 2 1 22 22 H 1.09011 * 117.50980 * 134.71401 * 5 4 3 23 23 H 1.08995 * 117.58540 * 349.54342 * 5 4 3 24 24 H 0.97003 * 119.99852 * 180.02562 * 11 10 8 25 25 H 1.09000 * 113.79674 * 22.86534 * 16 2 1 26 26 H 1.08997 * 113.79631 * 251.37651 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3827 0.0000 4 6 3.0067 0.8795 -1.0404 5 6 4.5254 0.7908 -0.9364 6 6 3.8766 1.6868 -1.9955 7 1 3.9263 2.7649 -1.8422 8 6 3.9444 1.2302 -3.4301 9 1 3.3863 0.3617 -3.7474 10 6 4.7189 1.9214 -4.3375 11 7 5.3988 2.9788 -3.9511 12 14 4.8025 1.3558 -6.1160 13 1 3.7310 2.0230 -6.8984 14 1 6.1266 1.7112 -6.6867 15 1 4.6164 -0.1162 -6.1766 16 6 1.9997 -0.2301 -1.3634 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 2.4547 1.6792 0.9450 21 1 1.2995 2.1226 -0.3876 22 1 5.0006 -0.1290 -1.2774 23 1 5.0025 1.2796 -0.0870 24 1 5.9434 3.4652 -4.5897 25 1 1.2994 0.0288 -2.1575 26 1 2.4547 -1.2114 -1.4984 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147024.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:59 Heat of formation + Delta-G solvation = 37.636516 kcal Electronic energy + Delta-G solvation = -9394.838182 eV Core-core repulsion = 7667.507544 eV Total energy + Delta-G solvation = -1727.330637 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.82938 -36.37329 -34.02523 -29.51424 -27.55855 -26.89680 -23.40555 -22.23106 -19.30601 -18.40524 -16.82780 -16.34192 -16.07947 -15.67564 -14.73421 -14.13657 -13.74436 -13.41248 -12.94030 -12.87321 -12.60848 -12.25498 -12.16399 -11.55576 -11.26965 -10.97830 -10.49964 -10.31412 -9.54352 -8.19602 -6.24976 1.41953 1.42562 1.53858 2.40234 2.87112 3.11984 3.56423 3.71225 4.06083 4.18853 4.52152 4.59886 4.61904 4.79877 4.82573 4.90987 4.97006 5.04835 5.25302 5.29863 5.37662 5.51588 5.77083 6.20083 6.34291 6.81650 7.37992 8.92003 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.074985 B = 0.012953 C = 0.011875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.316898 B = 2161.113570 C = 2357.380263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.490 5.490 3 C 0.047 3.953 4 C -0.189 4.189 5 C -0.169 4.169 6 C 0.014 3.986 7 H 0.048 0.952 8 C -0.506 4.506 9 H 0.059 0.941 10 C 0.012 3.988 11 N -0.925 5.925 12 Si 0.964 3.036 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.265 1.265 16 C 0.054 3.946 17 H 0.033 0.967 18 H 0.078 0.922 19 H 0.079 0.921 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.264 0.736 25 H 0.068 0.932 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 -3.907 3.869 8.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.213 5.213 3 C -0.082 4.082 4 C -0.190 4.190 5 C -0.206 4.206 6 C -0.005 4.005 7 H 0.066 0.934 8 C -0.544 4.544 9 H 0.077 0.923 10 C -0.187 4.187 11 N -0.564 5.564 12 Si 0.788 3.212 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.189 1.189 16 C -0.074 4.074 17 H 0.052 0.948 18 H 0.097 0.903 19 H 0.098 0.902 20 H 0.107 0.893 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.741 -4.233 4.350 9.071 hybrid contribution 0.030 0.512 -1.446 1.534 sum -6.711 -3.721 2.904 8.205 Atomic orbital electron populations 1.22921 0.88679 1.02954 1.01520 1.68433 1.09936 1.18463 1.24444 1.23445 0.95335 0.91150 0.98227 1.22787 0.91777 1.01857 1.02558 1.22816 0.91877 1.03099 1.02851 1.19686 0.97790 0.92671 0.90398 0.93368 1.20919 1.27603 1.12434 0.93431 0.92297 1.25891 0.94713 0.94748 1.03383 1.70089 1.30303 1.19512 1.36504 0.85467 0.77583 0.78970 0.79133 1.19714 1.20735 1.18938 1.23292 0.95487 0.98261 0.90395 0.94797 0.90310 0.90196 0.89331 0.90936 0.90813 0.90221 0.92678 0.91394 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.31 9.64 127.69 1.23 0.92 15 2 N -0.49 -16.58 6.55 -944.69 -6.19 -22.77 15 3 C 0.05 1.66 8.00 86.17 0.69 2.35 15 4 C -0.19 -8.12 3.07 -52.35 -0.16 -8.28 15 5 C -0.17 -7.81 10.24 30.47 0.31 -7.50 15 6 C 0.01 0.71 5.58 -11.71 -0.07 0.65 15 7 H 0.05 2.76 7.90 -2.39 -0.02 2.74 15 8 C -0.51 -28.30 9.06 25.60 0.23 -28.07 15 9 H 0.06 3.20 7.59 -2.91 -0.02 3.18 15 10 C 0.01 0.65 5.46 84.65 0.46 1.12 15 11 N -0.93 -54.94 13.13 21.45 0.28 -54.66 15 12 Si 0.96 43.44 29.54 68.60 2.03 45.47 15 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 15 14 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 16 C 0.05 2.05 7.56 86.16 0.65 2.70 15 17 H 0.03 0.88 7.63 -2.39 -0.02 0.86 15 18 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 19 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.09 2.93 8.14 -2.39 -0.02 2.91 15 21 H 0.07 2.44 7.92 -2.39 -0.02 2.42 15 22 H 0.07 3.44 8.14 -2.38 -0.02 3.42 15 23 H 0.08 3.43 8.14 -2.39 -0.02 3.41 15 24 H 0.26 14.74 8.31 -92.71 -0.77 13.97 15 25 H 0.07 2.55 7.62 -2.39 -0.02 2.53 15 26 H 0.08 2.91 8.14 -2.39 -0.02 2.89 15 Total: -1.00 -60.41 224.98 0.61 -59.81 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.14 Total: 8.28 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 3.35 Total: -36.12 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -5.91 Total: -77.43 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -60.41 0.61 -59.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147024.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.442 kcal (2) G-P(sol) polarization free energy of solvation -60.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds