Wall clock time and date at job start Mon Mar 30 2020 02:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48102 * 110.99800 * 2 1 4 4 C 1.53285 * 85.92797 * 222.88022 * 3 2 1 5 5 C 1.52327 * 128.80365 * 243.48648 * 4 3 2 6 6 C 1.52330 * 128.80633 * 163.14652 * 4 3 2 7 7 H 1.09004 * 117.51708 * 225.36256 * 6 4 3 8 8 C 1.50694 * 117.51759 * 10.43590 * 6 4 3 9 9 H 1.08002 * 120.00179 * 359.97438 * 8 6 4 10 10 C 1.37879 * 120.00472 * 180.02562 * 8 6 4 11 11 N 1.31514 * 119.99350 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 120.00608 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47339 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47239 * 300.00306 * 12 10 8 15 15 H 1.48504 * 109.46636 * 59.99865 * 12 10 8 16 16 C 1.48108 * 110.99669 * 260.41967 * 2 1 3 17 17 H 1.09000 * 109.47833 * 59.99754 * 1 2 3 18 18 H 1.09008 * 109.47046 * 179.97438 * 1 2 3 19 19 H 1.09006 * 109.47034 * 299.99075 * 1 2 3 20 20 H 1.09002 * 113.80130 * 108.62428 * 3 2 1 21 21 H 1.09007 * 113.90956 * 337.14382 * 3 2 1 22 22 H 1.08999 * 117.52005 * 134.67994 * 5 4 3 23 23 H 1.09002 * 117.51878 * 349.55415 * 5 4 3 24 24 H 0.97005 * 119.99661 * 179.97438 * 11 10 8 25 25 H 1.09000 * 113.79690 * 22.87005 * 16 2 1 26 26 H 1.09002 * 113.79667 * 251.37478 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3827 0.0000 4 6 3.0067 0.8796 -1.0404 5 6 4.5237 0.7909 -0.9356 6 6 3.8764 1.6869 -1.9955 7 1 3.9255 1.3568 -3.0332 8 6 3.9451 3.1773 -1.7835 9 1 3.3895 3.6344 -0.9780 10 6 4.7165 3.9577 -2.6184 11 7 5.3927 3.4011 -3.5995 12 14 4.8011 5.8052 -2.3561 13 1 5.6918 6.4101 -3.3787 14 1 3.4398 6.3855 -2.4791 15 1 5.3395 6.0886 -1.0014 16 6 1.9997 -0.2301 -1.3634 17 1 -0.3635 0.5138 -0.8899 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5137 0.8901 20 1 2.4546 1.6792 0.9451 21 1 1.3007 2.1242 -0.3871 22 1 4.9992 -0.1290 -1.2760 23 1 4.9992 1.2796 -0.0852 24 1 5.9351 3.9501 -4.1872 25 1 1.2993 0.0289 -2.1575 26 1 2.4546 -1.2114 -1.4985 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261147025.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:01 Heat of formation + Delta-G solvation = 57.066400 kcal Electronic energy + Delta-G solvation = -9394.120864 eV Core-core repulsion = 7667.632770 eV Total energy + Delta-G solvation = -1726.488094 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.23969 -34.57324 -32.00296 -28.06650 -25.72424 -25.13594 -21.92288 -20.29820 -17.58195 -16.36274 -15.04531 -14.87927 -14.38278 -14.02092 -13.03809 -12.61468 -12.07278 -11.80116 -11.12160 -10.95697 -10.86849 -10.78945 -10.34181 -9.81463 -9.40700 -9.01033 -8.82057 -8.34809 -7.89405 -6.09631 -4.08693 3.29027 3.33893 3.36329 4.36479 4.48650 5.02726 5.30537 5.37607 5.53864 5.68312 5.75354 6.02786 6.06325 6.17780 6.39072 6.51460 6.73748 6.80030 6.90029 6.95674 7.13922 7.60093 7.65330 7.87824 8.41800 8.92557 9.51211 11.01023 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.074979 B = 0.012953 C = 0.011877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.349527 B = 2161.166244 C = 2357.012221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.488 5.488 3 C 0.052 3.948 4 C -0.198 4.198 5 C -0.172 4.172 6 C 0.050 3.950 7 H 0.078 0.922 8 C -0.493 4.493 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.887 5.887 12 Si 0.896 3.104 13 H -0.286 1.286 14 H -0.276 1.276 15 H -0.275 1.275 16 C 0.041 3.959 17 H 0.031 0.969 18 H 0.061 0.939 19 H 0.061 0.939 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.263 0.737 25 H 0.063 0.937 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -3.131 3.575 7.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.210 5.210 3 C -0.076 4.076 4 C -0.199 4.199 5 C -0.210 4.210 6 C 0.031 3.969 7 H 0.096 0.904 8 C -0.530 4.530 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.524 5.524 12 Si 0.724 3.276 13 H -0.211 1.211 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.087 4.087 17 H 0.049 0.951 18 H 0.080 0.920 19 H 0.080 0.920 20 H 0.094 0.906 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.551 -3.540 3.957 7.682 hybrid contribution -0.291 1.416 -0.451 1.514 sum -5.843 -2.124 3.506 7.137 Atomic orbital electron populations 1.22832 0.91211 1.01363 1.00579 1.68473 1.07383 1.20058 1.25100 1.23233 0.95944 0.89600 0.98797 1.22596 0.91847 1.00871 1.04548 1.22868 0.90222 1.02437 1.05448 1.19845 0.93339 0.92270 0.91415 0.90425 1.20577 1.28004 0.90237 1.14192 0.92321 1.25036 0.95073 0.98838 0.94719 1.69955 1.29353 1.35871 1.17213 0.86590 0.78073 0.84936 0.78034 1.21145 1.20118 1.20055 1.23449 0.96379 0.98919 0.89993 0.95054 0.91979 0.92019 0.90579 0.91676 0.91408 0.90275 0.92702 0.91871 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.64 60.06 0.58 0.42 15 2 N -0.49 -8.94 6.55 -249.91 -1.64 -10.58 15 3 C 0.05 1.04 7.57 -3.02 -0.02 1.02 15 4 C -0.20 -4.34 3.07 -154.99 -0.48 -4.82 15 5 C -0.17 -3.99 10.24 -27.00 -0.28 -4.26 15 6 C 0.05 1.29 5.58 -92.04 -0.51 0.78 15 7 H 0.08 2.14 7.90 -51.93 -0.41 1.73 15 8 C -0.49 -13.63 9.06 -34.44 -0.31 -13.94 15 9 H 0.06 1.59 7.59 -52.49 -0.40 1.19 15 10 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 11 N -0.89 -25.81 13.12 55.43 0.73 -25.08 15 12 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 15 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 16 C 0.04 0.77 7.99 -3.01 -0.02 0.75 15 17 H 0.03 0.46 7.63 -51.93 -0.40 0.06 15 18 H 0.06 0.82 8.14 -51.92 -0.42 0.40 15 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.08 1.49 8.14 -51.93 -0.42 1.07 15 21 H 0.07 1.28 7.93 -51.92 -0.41 0.87 15 22 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 23 H 0.08 1.85 8.14 -51.93 -0.42 1.42 15 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 25 H 0.06 1.14 7.62 -51.93 -0.40 0.74 15 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 LS Contribution 224.97 15.07 3.39 3.39 Total: -1.00 -28.57 224.97 -7.37 -35.94 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.68 Total: -1.47 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.14 Total: -18.30 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.91 Total: -35.66 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -28.57 -7.37 -35.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147025.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.007 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds